NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16885.1 Public Mus musculus 2 6820408C15Rik 23 108 98 CCDS HistoryNCBI Gene:228778Re-query CCDS DB by CCDS ID:16885.1Re-query CCDS DB by GeneID:228778See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039961.11 ENSMUSP00000037024.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039961.11Link to Ensembl Protein Viewer:ENSMUSP00000037024.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039961Re-query CCDS DB by Protein ID:ENSMUSP00000037024
Original member Current member NCBI NM_177656.4 NP_808324.1 Accepted alive Link to Nucleotide Sequence:NM_177656.4Link to Protein Sequence:NP_808324.1Re-query CCDS DB by Nucleotide ID:NM_177656Re-query CCDS DB by Protein ID:NP_808324Link to BLAST:NP_808324.1

Chromosomal Locations for CCDS 16885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152427755 152427765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152427941 152427995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152428925 152429024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152434036 152434148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152437485 152437643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152439610 152439709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152440765 152440922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152441000 152441101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152441216 152441302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152442374 152442492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152444073 152444133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGCACAGAAACAAACCTCGAGACCTCAATTCTCAGGGAACAAGTTTCAAGTACCTGTGAGATTGGGGC
CAGAGAAGAACTTGAAGCCATCTACTCTGCCTCCCCTCCGACAAGTCAAAGGCCGCAACAAAAGCAAGAC
GAAGAATCTGAATAAAATCCAACCAGTACAGTCCCAGGTCTCTGTAGAGATGGCAAACTCAACAAAGACT
TCAGGAGGACTTCGAAGAAGGGACCAAACGCACCACGGGAAAGTGCAGGCCAAGGTCCGGCTGATGAGGT
CGATGCTTCGAAACCAGCGGACCTCGCTCCAGGAGCTCTACAGCCACGAAGGCTACCTCAGCAAGCTCAA
CAAGGAGCTGATCAAGGCCATCCTGGACACTGAGGACAGCGTGGCCTTGAGCGTGCGTGAAATGCTACAG
CAGCAGAGTATCCTCGGGAGTATCATCGACATCTTGGAATATTCAAACAAGAAGCGGGTGCAGCAGCTGA
GGTCTGAGCTCCAGGAGTGGAAAGAGAAGGAGGAGAGCAAGACAAACAGCCTTCAGAGGGAGGTGGATCA
GCTGAACTCCGAGATCCAGAAGGCCAGCGAGGAGGTGAATTTCCTGGACACCTACATGGATCACGAGTAT
CCCGTCAAGTTGGTTCAGATCGCCAGCCACATACGCCAGGTGCAGCAGGCAAAGGACAACCAGCAGGATG
AGCTGGACAACCTTAGCGAGATGCGGGAAACCATCCTGGCACTTTTTTCCAACGTAATTCAAGAGAAGAA
GAAGAAAATCCTGAAGTCTCTGGTCGTGAATACTCAGAAACCCCATGAGAACATACTGCTGCTGAAGACC
CTGGACAGACGGCGACTGCAGAGGTGCATGGTCTTGTTCAGAGAGCTTATTGAACAGATGAAAGAAGAGA
TTCCCATCCTACTCTCAGAGGTGGAGCAGATGTGTGCAGAGCTCTGGAACCCGAGAGAGGCCGTTTATAA
GGATGTTCTGCTTCAGAGACCCAAGTGCACCCCAGACATGGCTGTTGAGCTCAACATTCCTGTGCAGGAG
CCATTCCCCTTCTAG

Translation (354 aa):
MAQKQTSRPQFSGNKFQVPVRLGPEKNLKPSTLPPLRQVKGRNKSKTKNLNKIQPVQSQVSVEMANSTKT
SGGLRRRDQTHHGKVQAKVRLMRSMLRNQRTSLQELYSHEGYLSKLNKELIKAILDTEDSVALSVREMLQ
QQSILGSIIDILEYSNKKRVQQLRSELQEWKEKEESKTNSLQREVDQLNSEIQKASEEVNFLDTYMDHEY
PVKLVQIASHIRQVQQAKDNQQDELDNLSEMRETILALFSNVIQEKKKKILKSLVVNTQKPHENILLLKT
LDRRRLQRCMVLFRELIEQMKEEIPILLSEVEQMCAELWNPREAVYKDVLLQRPKCTPDMAVELNIPVQE
PFPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH