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Report for CCDS16851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16851.1 Public Mus musculus 2 Cstdc2 23 108 98 CCDS HistoryNCBI Gene:77705Re-query CCDS DB by CCDS ID:16851.1Re-query CCDS DB by GeneID:77705See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028937.2 ENSMUSP00000028937.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028937.2Link to Ensembl Protein Viewer:ENSMUSP00000028937.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028937Re-query CCDS DB by Protein ID:ENSMUSP00000028937
Original member Current member NCBI NM_029960.3 NP_084236.1 Accepted alive Link to Nucleotide Sequence:NM_029960.3Link to Protein Sequence:NP_084236.1Re-query CCDS DB by Nucleotide ID:NM_029960Re-query CCDS DB by Protein ID:NP_084236Link to BLAST:NP_084236.1

Chromosomal Locations for CCDS 16851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148846916 148847002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148847917 148848021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148850671 148850880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGGCTCTGCCCTGGACAATATTACTGGCTCTCTCTGGTATCTATGTCCAGGGAGCTCAGGCATGGTGTT
CGGAAGAGGATACTCTCGAACTCGATAAACTAGTCAGTGAACCTGACATAGTGAAGTTTGCTTTGAGTGC
ATTCCACAAAAAGAGCAAGGATGAATATGCCTACAGGGTGATACACATCATGAATTTCTTGAAAGTACAG
GAAGAACCACCACAAACTTTCTTCGTGAAGCTGAGGCTGACAAGAACCATCTGTATGAAATTTGAGAAAA
GCCTAGACACCTGCCCCTTACCTGAACTGCAAAATATCCTCATCTGTTCCTTCAGCATCAGCAGCCCAGG
CTCAAAACAGTTCAACCTGTTGAAAATGACTTGTTCTGAGGGGCTTCTCTGA

Translation (133 aa):
MALPWTILLALSGIYVQGAQAWCSEEDTLELDKLVSEPDIVKFALSAFHKKSKDEYAYRVIHIMNFLKVQ
EEPPQTFFVKLRLTRTICMKFEKSLDTCPLPELQNILICSFSISSPGSKQFNLLKMTCSEGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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