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Report for CCDS16806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16806.1 Public Mus musculus 2 Flrt3 23 108 98 CCDS HistoryNCBI Gene:71436Re-query CCDS DB by CCDS ID:16806.1Re-query CCDS DB by GeneID:71436See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056760.3 ENSMUSP00000053399.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056760.3Link to Ensembl Protein Viewer:ENSMUSP00000053399.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056760Re-query CCDS DB by Protein ID:ENSMUSP00000053399
Original member Current member EBI ENSMUST00000110057.2 ENSMUSP00000105684.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110057.2Link to Ensembl Protein Viewer:ENSMUSP00000105684.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110057Re-query CCDS DB by Protein ID:ENSMUSP00000105684
Original member Current member NCBI NM_001172160.1 NP_001165631.1 Accepted alive Link to Nucleotide Sequence:NM_001172160.1Link to Protein Sequence:NP_001165631.1Re-query CCDS DB by Nucleotide ID:NM_001172160Re-query CCDS DB by Protein ID:NP_001165631Link to BLAST:NP_001165631.1
Original member Current member NCBI NM_178382.4 NP_848469.1 Accepted alive Link to Nucleotide Sequence:NM_178382.4Link to Protein Sequence:NP_848469.1Re-query CCDS DB by Nucleotide ID:NM_178382Re-query CCDS DB by Protein ID:NP_848469Link to BLAST:NP_848469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165631.1 649 Q8BGT1 649 100% 0 0
NP_848469.1 649 Q8BGT1 649 100% 0 0

Chromosomal Locations for CCDS 16806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 140659757 140661706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGATCAGCCCAGCCTGGAGCCTCTTCCTCATCGGGACTAAAATTGGGCTGTTCTTCCAAGTGGCACCTC
TGTCAGTTGTGGCTAAATCCTGTCCATCTGTATGTCGCTGTGACGCAGGCTTCATTTACTGTAACGATCG
CTCTCTGACATCCATTCCAGTGGGAATTCCGGAGGATGCTACAACACTCTACCTTCAGAACAACCAAATA
AACAATGTTGGGATTCCTTCCGATTTGAAGAACTTGCTGAAAGTACAAAGAATATACCTATACCACAACA
GTTTAGATGAATTCCCTACCAACCTTCCAAAGTATGTCAAAGAGTTACATTTGCAAGAGAATAACATAAG
GACTATCACCTATGATTCACTTTCGAAAATTCCGTATCTGGAAGAGTTACACTTGGATGATAACTCAGTC
TCGGCTGTTAGCATCGAAGAGGGAGCATTTCGAGACAGTAACTATCTGCGGCTGCTTTTTCTGTCCCGTA
ACCACCTTAGCACAATCCCGGGGGGCTTGCCCAGGACTATTGAGGAATTACGCCTGGATGACAATCGCAT
ATCAACGATCTCTTCCCCATCACTTCATGGTCTCACAAGCCTGAAACGCCTGGTTTTAGATGGAAACTTG
TTGAACAACCATGGTTTGGGTGACAAAGTTTTCTTCAACTTAGTAAACTTAACAGAGCTGTCCCTGGTGA
GGAATTCCTTGACAGCAGCGCCAGTGAACCTTCCCGGCACAAGCCTGAGGAAGCTTTACCTTCAAGACAA
CCATATCAACCGGGTACCCCCAAATGCTTTTTCTTATTTAAGGCAGCTGTATCGACTCGATATGTCTAAT
AATAACCTAAGCAATTTACCTCAGGGTATCTTTGATGATTTGGACAATATAACCCAACTGATTCTTCGCA
ACAATCCTTGGTATTGTGGATGCAAGATGAAATGGGTACGAGACTGGTTACAGTCGCTACCGGTGAAGGT
CAATGTGCGTGGGCTCATGTGCCAAGCCCCAGAAAAGGTCCGTGGAATGGCTATCAAGGACCTCAGTGCA
GAACTGTTTGATTGTAAAGACAGTGGGATTGTGAGCACCATTCAGATAACCACTGCAATACCCAACACAG
CATATCCTGCTCAAGGACAGTGGCCAGCTCCTGTGACCAAACAACCAGATATTAAAAACCCCAAGCTCAT
TAAGGATCAGCGAACTACAGGCAGCCCCTCACGGAAAACAATTTTAATTACTGTGAAATCTGTCACCCCT
GACACAATCCACATATCCTGGAGACTTGCTCTGCCTATGACTGCTCTGCGACTCAGCTGGCTTAAACTGG
GCCATAGCCCAGCCTTTGGATCTATAACAGAAACAATCGTAACAGGAGAACGCAGTGAATACTTGGTCAC
CGCCCTAGAACCTGAATCACCCTATAGAGTATGCATGGTTCCCATGGAAACCAGTAACCTTTACCTGTTT
GATGAAACACCTGTTTGTATTGAGACCCAAACTGCCCCTCTTCGAATGTACAACCCCACAACCACCCTCA
ATCGAGAGCAAGAGAAAGAACCTTACAAAAATCCAAATTTACCTTTGGCTGCCATCATTGGTGGGGCTGT
GGCCCTGGTAAGCATCGCCCTCCTTGCTTTGGTGTGTTGGTATGTGCATAGGAACGGGTCACTGTTTTCA
CGGAACTGTGCGTACAGCAAAGGGCGGAGGAGAAAGGATGACTATGCAGAAGCCGGTACTAAGAAAGACA
ACTCCATCCTGGAAATCAGGGAAACTTCTTTCCAGATGCTACCGATAAGCAATGAACCCATCTCCAAGGA
GGAGTTTGTAATACACACCATATTTCCTCCGAATGGGATGAATCTGTACAAGAACAACCTCAGTGAGAGC
AGTAGTAACCGGAGCTACAGAGACAGTGGCATCCCAGACTCGGACCACTCACACTCATGA

Translation (649 aa):
MISPAWSLFLIGTKIGLFFQVAPLSVVAKSCPSVCRCDAGFIYCNDRSLTSIPVGIPEDATTLYLQNNQI
NNVGIPSDLKNLLKVQRIYLYHNSLDEFPTNLPKYVKELHLQENNIRTITYDSLSKIPYLEELHLDDNSV
SAVSIEEGAFRDSNYLRLLFLSRNHLSTIPGGLPRTIEELRLDDNRISTISSPSLHGLTSLKRLVLDGNL
LNNHGLGDKVFFNLVNLTELSLVRNSLTAAPVNLPGTSLRKLYLQDNHINRVPPNAFSYLRQLYRLDMSN
NNLSNLPQGIFDDLDNITQLILRNNPWYCGCKMKWVRDWLQSLPVKVNVRGLMCQAPEKVRGMAIKDLSA
ELFDCKDSGIVSTIQITTAIPNTAYPAQGQWPAPVTKQPDIKNPKLIKDQRTTGSPSRKTILITVKSVTP
DTIHISWRLALPMTALRLSWLKLGHSPAFGSITETIVTGERSEYLVTALEPESPYRVCMVPMETSNLYLF
DETPVCIETQTAPLRMYNPTTTLNREQEKEPYKNPNLPLAAIIGGAVALVSIALLALVCWYVHRNGSLFS
RNCAYSKGRRRKDDYAEAGTKKDNSILEIRETSFQMLPISNEPISKEEFVIHTIFPPNGMNLYKNNLSES
SSNRSYRDSGIPDSDHSHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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