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Report for CCDS16797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16797.1 Public Mus musculus 2 Jag1 23 108 98 CCDS HistoryNCBI Gene:16449Re-query CCDS DB by CCDS ID:16797.1Re-query CCDS DB by GeneID:16449See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028735.7 ENSMUSP00000028735.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028735.7Link to Ensembl Protein Viewer:ENSMUSP00000028735.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028735Re-query CCDS DB by Protein ID:ENSMUSP00000028735
Original member Current member NCBI NM_013822.5 NP_038850.1 Accepted alive Link to Nucleotide Sequence:NM_013822.5Link to Protein Sequence:NP_038850.1Re-query CCDS DB by Nucleotide ID:NM_013822Re-query CCDS DB by Protein ID:NP_038850Link to BLAST:NP_038850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038850.1 1218 Q9QXX0 1218 100% 0 0

Chromosomal Locations for CCDS 16797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 137083024 137083481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137084282 137084432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137084575 137084706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137084922 137085155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137085246 137085355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137085918 137086031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137087077 137087162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137087616 137087643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137088112 137088228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137088396 137088509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137088597 137088710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137089212 137089325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137089765 137089929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137090855 137091005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137091436 137091609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137091950 137091996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137092497 137092610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137093207 137093320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137094453 137094566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137095447 137095566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137096193 137096323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137100056 137100116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137101581 137101835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137106867 137106918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137115404 137115709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137116177 137116257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3657 nt):
ATGCGGTCCCCACGGACGCGCGGCCGGCCCGGGCGCCCCCTGAGTCTTCTGCTCGCCCTGCTCTGTGCCC
TGCGAGCCAAGGTGTGCGGGGCCTCGGGTCAGTTTGAGCTGGAGATCCTGTCCATGCAGAACGTGAATGG
AGAGCTACAGAATGGGAACTGTTGTGGTGGAGTCCGGAACCCTGGCGACCGCAAGTGCACCCGCGACGAG
TGTGATACGTACTTCAAAGTGTGCCTCAAGGAGTATCAGTCCCGCGTCACTGCCGGGGGACCCTGCAGCT
TCGGCTCAGGGTCTACGCCTGTCATCGGGGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAACGACCG
TAATCGCATCGTACTGCCTTTCAGTTTCGCCTGGCCGAGGTCCTACACTTTGCTGGTGGAGGCCTGGGAT
TCCAGTAATGACACTATTCAACCTGATAGCATAATTGAAAAGGCTTCTCACTCAGGCATGATAAACCCTA
GCCGGCAATGGCAGACACTGAAACAAAACACAGGGATTGCCCACTTCGAGTATCAGATCCGAGTGACCTG
TGATGACCACTACTATGGCTTTGGCTGCAATAAGTTCTGTCGTCCCAGAGATGACTTCTTTGGACATTAT
GCCTGTGACCAGAACGGCAACAAAACTTGCATGGAAGGCTGGATGGGTCCTGATTGCAACAAAGCTATCT
GCCGACAGGGCTGCAGTCCCAAGCATGGGTCTTGTAAACTTCCAGGTGACTGCAGGTGCCAGTACGGTTG
GCAGGGCCTGTACTGCGACAAGTGCATCCCGCACCCAGGATGTGTCCACGGCACCTGCAATGAACCCTGG
CAGTGCCTCTGTGAGACCAACTGGGGTGGACAGCTCTGTGACAAAGATCTGAATTACTGTGGGACTCATC
AGCCCTGTCTCAACCGGGGAACATGTAGCAACACTGGGCCTGACAAATACCAGTGCTCCTGCCCAGAGGG
CTACTCGGGCCCCAACTGTGAAATTGCTGAGCATGCTTGTCTCTCTGACCCCTGCCATAACCGAGGCAGC
TGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGTGTTCTCCAGGCTGGACTGGCCCCACGTGTTCCACAA
ACATCGATGACTGTTCTCCAAATAACTGTTCCCATGGGGGCACCTGCCAGGATCTGGTGAATGGATTCAA
GTGTGTGTGCCCGCCCCAGTGGACTGGCAAGACTTGTCAGTTAGATGCAAATGAGTGCGAGGCCAAACCT
TGTGTAAATGCCAGATCCTGTAAGAATCTGATTGCCAGCTACTACTGTGATTGCCTTCCTGGCTGGATGG
GTCAGAACTGTGACATAAATATCAATGACTGCCTTGGCCAGTGTCAGAATGACGCCTCCTGTCGGGATTT
GGTTAATGGTTATCGCTGTATCTGTCCACCTGGCTATGCAGGCGATCACTGTGAGAGAGACATCGATGAG
TGTGCTAGCAACCCCTGCTTGAATGGGGGTCACTGTCAGAATGAAATCAACAGATTCCAGTGTCTCTGTC
CCACTGGTTTCTCTGGAAACCTCTGTCAGCTGGACATCGATTACTGCGAGCCCAACCCTTGCCAGAATGG
CGCCCAGTGCTACAATCGTGCCAGTGACTATTTCTGCAAGTGCCCCGAGGACTATGAGGGCAAGAACTGC
TCACACCTGAAAGACCACTGCCGTACCACCACCTGCGAAGTGATTGACAGCTGCACTGTGGCCATGGCCT
CCAACGACACGCCTGAAGGGGTGCGGTATATCTCTTCTAACGTCTGTGGTCCCCATGGGAAGTGCAAGAG
CCAGTCGGGAGGCAAATTCACCTGTGACTGTAACAAAGGCTTCACCGGCACCTACTGCCATGAAAATATC
AACGACTGCGAGAGCAACCCCTGTAAAAACGGTGGCACCTGCATCGATGGCGTTAACTCCTACAAGTGTA
TCTGTAGTGACGGCTGGGAGGGAGCGCACTGTGAGAACAACATAAATGACTGTAGCCAGAACCCTTGTCA
CTACGGGGGTACATGTCGAGACCTGGTCAATGACTTTTACTGTGACTGCAAAAATGGCTGGAAAGGAAAG
ACTTGCCATTCCCGTGACAGCCAGTGTGACGAAGCCACGTGTAATAATGGTGGTACCTGCTATGATGAAG
TGGACACGTTTAAGTGCATGTGTCCCGGTGGCTGGGAAGGAACAACCTGTAATATAGCTAGAAACAGTAG
CTGCCTGCCGAACCCCTGTCATAATGGAGGTACCTGCGTGGTCAATGGAGACTCCTTCACCTGTGTCTGC
AAAGAAGGCTGGGAGGGGCCTATTTGTACTCAAAATACCAACGACTGCAGTCCCCATCCTTGTTACAATA
GCGGGACCTGTGTGGACGGAGACAACTGGTATCGGTGCGAATGTGCCCCGGGTTTTGCTGGGCCAGACTG
CAGGATAAACATCAATGAGTGCCAGTCTTCCCCTTGTGCCTTTGGGGCCACCTGTGTGGATGAGATCAAT
GGCTACCAGTGTATCTGCCCTCCAGGACATAGTGGTGCCAAGTGCCATGAAGTTTCAGGGCGATCTTGCA
TCACCATGGGGAGAGTGATACTTGATGGGGCCAAGTGGGATGATGACTGTAACACCTGCCAGTGCCTGAA
TGGACGGGTGGCCTGCTCCAAGGTCTGGTGTGGCCCGAGACCTTGCAGGCTCCACAAAAGCCACAATGAG
TGCCCCAGTGGGCAGAGCTGCATCCCGGTCCTGGATGACCAGTGTTTCGTGCGCCCCTGCACTGGTGTTG
GCGAGTGTCGGTCCTCCAGCCTCCAGCCAGTGAAGACCAAGTGCACATCTGACTCCTATTACCAGGATAA
CTGTGCAAACATCACTTTCACCTTTAACAAAGAGATGATGTCTCCAGGTCTTACCACCGAACACATTTGC
AGCGAATTGAGGAATTTGAATATCCTGAAGAATGTTTCTGCTGAATATTCGATCTACATAGCCTGTGAGC
CTTCCCTGTCAGCAAACAATGAAATACACGTGGCCATCTCTGCAGAAGACATCCGGGATGATGGGAACCC
TGTCAAGGAAATTACCGATAAAATAATAGATCTCGTTAGTAAACGGGATGGAAACAGCTCACTTATTGCT
GCGGTTGCAGAAGTCAGAGTTCAGAGGCGTCCTCTGAAAAACAGAACAGATTTCCTGGTTCCTCTGCTGA
GCTCTGTCTTAACAGTGGCTTGGGTCTGTTGCTTGGTGACAGCCTTCTACTGGTGTGTAAGGAAGCGGCG
GAAGCCCAGCAGCCACACTCACTCCGCCCCCGAGGACAACACCACCAACAATGTGCGGGAGCAGCTGAAC
CAAATCAAAAACCCCATCGAGAAACACGGAGCCAACACGGTCCCCATTAAGGATTACGAGAACAAAAACT
CGAAAATGTCAAAAATCAGGACACACAACTCGGAAGTGGAGGAGGATGACATGGATAAACACCAGCAGAA
AGTCCGCTTTGCCAAACAGCCAGTGTATACGCTGGTAGACAGAGAGGAGAAGGCCCCCAGCGGCACGCCG
ACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAGACTTGGAAAGTGCCCAGAGCTTGAACCGGA
TGGAATACATCGTATAG

Translation (1218 aa):
MRSPRTRGRPGRPLSLLLALLCALRAKVCGASGQFELEILSMQNVNGELQNGNCCGGVRNPGDRKCTRDE
CDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWD
SSNDTIQPDSIIEKASHSGMINPSRQWQTLKQNTGIAHFEYQIRVTCDDHYYGFGCNKFCRPRDDFFGHY
ACDQNGNKTCMEGWMGPDCNKAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGTCNEPW
QCLCETNWGGQLCDKDLNYCGTHQPCLNRGTCSNTGPDKYQCSCPEGYSGPNCEIAEHACLSDPCHNRGS
CKETSSGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKP
CVNARSCKNLIASYYCDCLPGWMGQNCDININDCLGQCQNDASCRDLVNGYRCICPPGYAGDHCERDIDE
CASNPCLNGGHCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQCYNRASDYFCKCPEDYEGKNC
SHLKDHCRTTTCEVIDSCTVAMASNDTPEGVRYISSNVCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENI
NDCESNPCKNGGTCIDGVNSYKCICSDGWEGAHCENNINDCSQNPCHYGGTCRDLVNDFYCDCKNGWKGK
TCHSRDSQCDEATCNNGGTCYDEVDTFKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGDSFTCVC
KEGWEGPICTQNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCAFGATCVDEIN
GYQCICPPGHSGAKCHEVSGRSCITMGRVILDGAKWDDDCNTCQCLNGRVACSKVWCGPRPCRLHKSHNE
CPSGQSCIPVLDDQCFVRPCTGVGECRSSSLQPVKTKCTSDSYYQDNCANITFTFNKEMMSPGLTTEHIC
SELRNLNILKNVSAEYSIYIACEPSLSANNEIHVAISAEDIRDDGNPVKEITDKIIDLVSKRDGNSSLIA
AVAEVRVQRRPLKNRTDFLVPLLSSVLTVAWVCCLVTAFYWCVRKRRKPSSHTHSAPEDNTTNNVREQLN
QIKNPIEKHGANTVPIKDYENKNSKMSKIRTHNSEVEEDDMDKHQQKVRFAKQPVYTLVDREEKAPSGTP
TKHPNWTNKQDNRDLESAQSLNRMEYIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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