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Report for CCDS16707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16707.1 Public Mus musculus 2 Mal 23 108 98 CCDS HistoryNCBI Gene:17153Re-query CCDS DB by CCDS ID:16707.1Re-query CCDS DB by GeneID:17153See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16707.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028854.14 ENSMUSP00000028854.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028854.14Link to Ensembl Protein Viewer:ENSMUSP00000028854.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028854Re-query CCDS DB by Protein ID:ENSMUSP00000028854
Original member Current member NCBI NM_010762.5 NP_034892.1 Accepted alive Link to Nucleotide Sequence:NM_010762.5Link to Protein Sequence:NP_034892.1Re-query CCDS DB by Nucleotide ID:NM_010762Re-query CCDS DB by Protein ID:NP_034892Link to BLAST:NP_034892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034892.1 153 O09198-1 153 100% 0 0

Chromosomal Locations for CCDS 16707.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127634980 127635054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127638589 127638714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127640221 127640388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127656041 127656133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCTCCGGCAGCGGCTTCGGGTGGCAGCACCCTGCCCAGTGGCTTCTCGGTCTTCACCACCTTCCCTG
ACTTGCTCTTCGTTTGTGAGTTTGTCTTTGGAGGCCTGGTGTGGATCCTGATTGCCTCCTCCCTGGTACC
CTTGCCCCTGGCCCAGGGCTGGGTGATGTTTGTGTCTGTGTTCTGCTTTGTGGCCACCACTTCCCTGATG
ATCTTGTACATAATTGGTACTCATGGCGGTGAGACTTCCTGGATCACACTGGATGCAGCCTACCACTGTG
TGGCTGCCCTATTTTACCTCAGTGCCTCAGTTCTGGAAGCCCTGGCCACCATCTCAATGTTTGATGGCTT
TACTTACAAGCATTACCATGAAAACATCGCCGCAGTGGTGTTTGCCTACGTGGTCACTCTGATCTACGTG
GTCCATGCTGTGTTTTCCTTAATCAGATGGAAGTCTTCATAG

Translation (153 aa):
MAPAAASGGSTLPSGFSVFTTFPDLLFVCEFVFGGLVWILIASSLVPLPLAQGWVMFVSVFCFVATTSLM
ILYIIGTHGGETSWITLDAAYHCVAALFYLSASVLEALATISMFDGFTYKHYHENIAAVVFAYVVTLIYV
VHAVFSLIRWKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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