NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16687.1 Public Mus musculus 2 Usp8 23 108 98 CCDS HistoryNCBI Gene:84092Re-query CCDS DB by CCDS ID:16687.1Re-query CCDS DB by GeneID:84092See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028841.13 ENSMUSP00000028841.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028841.13Link to Ensembl Protein Viewer:ENSMUSP00000028841.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028841Re-query CCDS DB by Protein ID:ENSMUSP00000028841
Original member NCBI NM_019729.3 NP_062703.2 Updated not alive Link to Nucleotide Sequence:NM_019729.3Link to Protein Sequence:NP_062703.2Re-query CCDS DB by Nucleotide ID:NM_019729Re-query CCDS DB by Protein ID:NP_062703
Current member NCBI NM_019729.4 NP_062703.2 Accepted alive Link to Nucleotide Sequence:NM_019729.4Link to Protein Sequence:NP_062703.2Re-query CCDS DB by Nucleotide ID:NM_019729Re-query CCDS DB by Protein ID:NP_062703Link to BLAST:NP_062703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062703.2 1080 Q80U87 1080 100% 0 0

Chromosomal Locations for CCDS 16687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126718061 126718164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126720025 126720169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126725345 126725430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126729160 126729322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126732061 126732103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126733960 126734104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126736349 126736511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126737411 126737555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126737859 126738082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126742124 126742681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126747496 126747576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126748186 126748448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126750980 126751192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126752272 126752482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126754849 126755085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126755973 126756115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126758120 126758252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126758421 126758606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3243 nt):
ATGCCTGCTGTAGCTTCAGTTCCTAAAGAACTCTACCTCAGTTCTTCACTAAAAGACCTCAATAAGAAGA
CCGAAGTTAAACCTGAGAAAACCAGCACCAAGAATTATATACACAGCGCGCAGAAGATCTTCAAGACAGC
AGAAGAATGCAGACTAGATCGTGATGAGGAAAGGGCCTATGTGCTTTATATGAAATATGTGGCAGTTTAT
AATCTTATCAAAAAGAGACCTGATTTCAAGCAACAGCAGGATTATTATCTTTCAATACTTGGACCTGCAA
ACATCAAAAAAGCTATTGAAGAAGCTGAAAGACTCTCCGAAAGCCTTAAACTAAGATACGAAGAGGCTGA
AGTTCGGAAACAACTTGAAGAAAAGGACAGACGGGAGGAAGAGCAGCTGCAGCAACAGAAAAGGCAGGAG
ATGGGGAGAGAGGACAGCGGTGCGGCAGCCAAACGCTCTGTGGAAAATTTACTGGATTCCAAAACCAAAA
CCCAAAGGATTAACGGCGAGAAGAGTGAAGGAGCTGCAGCTGCAGAGAGAGGAGCCATCACAGCAAAGGA
ACTATATACGATGATGATGGATAAAAACACAAGCTTAATTATAATGGATGCTCGAAAAATACAGGATTAT
CAGCATTCCTGTATCTTGGATTCTCTCAGTGTTCCTGAAGAAGCTATCAGTCCAGGAGTCACTGCTAGTT
GGATTGAAGCAAACCTCTCAGATGATTCTAAAGACACATGGAAAAAGAGGGGGAGTGTGGACTATGTGGT
CCTTCTCGACTGGTTTAGTTCAGCGAAAGATTTGCTGCTTGGGACCACTCTACGGAGTCTGAAAGATGCA
CTTTTCAAGTGGGAAAGTAAAACTGTCCTGCGCCATGAGCCTTTGGTGTTGGAGGGCGGCTATGAAAACT
GGCTGCTTTGCTACCCGCAGTTTACAACCAATGCTAAGGTCACTCCACCCCCTCGGAGCAGAGCTGAAGA
GGTGTCTGTCTCATTGGATTTTACTTATCCCTCATTGGAAGAACCAGTTCCTTCCAAACTTCCTACCCAG
ATGCCACCTCCTCCTATAGAAACAAATGAAAAGGCACTGTTGGTAACTGATCAAGATGAAAAGCTGAGAC
TGTCAACCCAGCCAGCTCTAGCTGGACCTGGTGCGGCTCCCAGAGCTGAAGCCTCACCCATAATTCAGCC
AGCGCCTGCTACAAAGAGTGTTCCACAGGTTGATCGTACGAAAAAACCGTCAGTCAAGTTGCCTGAAGAT
CATAGAATAAAATCTGAAAATACAGATCAGAGTGGAAGAGTTCTTTCTGATCGATCCACCAAGCCAGTAT
TTCCCTCTCCAACCACCATGTTAACAGATGAAGAAAAGGCTCGTATTCATCAAGAAACTGCCCTTCTTAT
GGAAAAGAATAAACAGGAGAAGGAACTTTGGGACAAGCAGCAGAAGGAACAGAAAGAGAAGCTGAGAAGG
GAGGAACAAGAGCGCAAAGCTGGAAAGACACAGGATGCAGATGAACGTGACTCCACTGAGAATCAGCACA
AAGCAAAGGATGGACAAGAGAAAAAAGACAGCAAACAGACCAAGACGGAAGACAGAGAGCTTTCAGCAGA
CGGGGCCCAGGAAGCCACAGGAACACAAAGACAAAGTAAGAGTGAGCATGAAGCTTCTGATGCTAAGGTA
CCTGTGGAAGGTAAAAGGTGTCCCACGTCAGAGGCGCAGAAGAGGCCAGCAGATGTGTCCCCTGCATCCG
TGTCAGGAGAGCTGAATGCAGGCAAGGCTCAGCGAGAACCTTTGACGAGAGCACGAAGTGAAGAAATGGG
GAGAATTGTGCCGGGACTGCCTTTGGGCTGGGCCAAGTTTCTTGATCCAATCACCGGGACCTTTCGTTAC
TACCATTCCCCCACAAACACAGTTCATATGTATCCACCTGAAATGGCTCCTTCGTCTGCACCTCCTTCCA
CCCCGCCCACTCACAAAGTCAAGCCCCAGGTCCCTGCCGAGCGGGACAGGGAGCCATCGAAACTGAAGCG
CTCCTACTCCTCACCAGATATCACTCAGGCCCTGCAGGAGGAGGAGAAGAGGAGGCCGGCAGTGACCCCG
ATGGTCAACCGGGAAAACAAGCCACCATGTTACCCTAAAGCTGAGATTTCGAGGCTTTCTGCTTCTCAGA
TTCGGAACCTCAATCCTGTATTTGGAGGATCAGGACCAGCTCTTACTGGACTTCGTAATTTGGGAAATAC
TTGTTACATGAACTCAATCTTGCAGTGCCTGTGTAATGCTCCACATCTGGCTGATTATTTCAACCGAAAC
TGCTACCAGGATGATATCAACAGGTCAAATTTGTTGGGGCATAAAGGTGAAGTGGCAGAAGAATTTGGTA
TAATCATGAAAGCACTGTGGACAGGACAGTATAGATACATCAGTCCAAAGGACTTTAAAGTCACCATTGG
TAAGATTAATGACCAGTTTGCAGGCTCCAGCCAACAGGATTCACAAGAGCTGCTTCTGTTCCTCATGGAT
GGCCTGCATGAGGATCTGAATAAGGCTGACAATCGGAAGAGGCACAAGGAAGAGAACAACGAGCACCTGG
ATGACCTGCAGGCGGCCGAGCACGCCTGGCAGAAGCACAAGCAGCTCAACGAGTCCATCATCGTGGCCCT
GTTCCAGGGCCAGTTCAAGTCCACAGTGCAGTGCCTCACCTGCCGCAGGAGGTCGCGCACCTTCGAGGCC
TTCATGTACTTGTCTTTGCCGCTAGCATCCACAAGTAAATGTACTCTACAGGACTGCCTTAGATTATTTT
CCAAAGAAGAAAAGCTTACAGATAACAACAGATTTTACTGCAGCCATTGCCGAGCTCGGCGGGATTCTCT
AAAGAAAATAGAAATCTGGAAATTACCTCCTGTGCTGTTAGTGCACCTGAAACGATTTTCCTATGACGGC
AGGTGGAAGCAGAAGCTGCAAACATCCGTGGATTTCCCATTGGAAAATCTTGACCTGTCACAGTACGTTA
TTGGTCCAAAAAACAGCTTGAAGAAATATAACTTGTTTTCTGTTTCAAACCACTACGGCGGGCTAGACGG
AGGCCACTACACAGCCTACTGTAAGAACGCGGCAAGGCAGCGCTGGTTTAAGTTTGATGACCATGAAGTT
TCTGATATCTCTGTGTCTTCTGTGAGGTCATCAGCAGCTTATATCCTCTTTTATACTTCCCTGGGACCAC
GCATAACTGATGTAGCCACATAG

Translation (1080 aa):
MPAVASVPKELYLSSSLKDLNKKTEVKPEKTSTKNYIHSAQKIFKTAEECRLDRDEERAYVLYMKYVAVY
NLIKKRPDFKQQQDYYLSILGPANIKKAIEEAERLSESLKLRYEEAEVRKQLEEKDRREEEQLQQQKRQE
MGREDSGAAAKRSVENLLDSKTKTQRINGEKSEGAAAAERGAITAKELYTMMMDKNTSLIIMDARKIQDY
QHSCILDSLSVPEEAISPGVTASWIEANLSDDSKDTWKKRGSVDYVVLLDWFSSAKDLLLGTTLRSLKDA
LFKWESKTVLRHEPLVLEGGYENWLLCYPQFTTNAKVTPPPRSRAEEVSVSLDFTYPSLEEPVPSKLPTQ
MPPPPIETNEKALLVTDQDEKLRLSTQPALAGPGAAPRAEASPIIQPAPATKSVPQVDRTKKPSVKLPED
HRIKSENTDQSGRVLSDRSTKPVFPSPTTMLTDEEKARIHQETALLMEKNKQEKELWDKQQKEQKEKLRR
EEQERKAGKTQDADERDSTENQHKAKDGQEKKDSKQTKTEDRELSADGAQEATGTQRQSKSEHEASDAKV
PVEGKRCPTSEAQKRPADVSPASVSGELNAGKAQREPLTRARSEEMGRIVPGLPLGWAKFLDPITGTFRY
YHSPTNTVHMYPPEMAPSSAPPSTPPTHKVKPQVPAERDREPSKLKRSYSSPDITQALQEEEKRRPAVTP
MVNRENKPPCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRN
CYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMD
GLHEDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEA
FMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDG
RWKQKLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEV
SDISVSSVRSSAAYILFYTSLGPRITDVAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH