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Report for CCDS16682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16682.1 Public Mus musculus 2 Dtwd1 23 108 98 CCDS HistoryNCBI Gene:69185Re-query CCDS DB by CCDS ID:16682.1Re-query CCDS DB by GeneID:69185See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110437.3 ENSMUSP00000106067.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110437.3Link to Ensembl Protein Viewer:ENSMUSP00000106067.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110437Re-query CCDS DB by Protein ID:ENSMUSP00000106067
Original member Current member EBI ENSMUST00000170908.7 ENSMUSP00000127662.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170908.7Link to Ensembl Protein Viewer:ENSMUSP00000127662.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170908Re-query CCDS DB by Protein ID:ENSMUSP00000127662
Original member Current member NCBI NM_001355583.1 NP_001342512.1 Accepted alive Link to Nucleotide Sequence:NM_001355583.1Link to Protein Sequence:NP_001342512.1Re-query CCDS DB by Nucleotide ID:NM_001355583Re-query CCDS DB by Protein ID:NP_001342512Link to BLAST:NP_001342512.1
Original member Current member NCBI NM_026981.2 NP_081257.1 Accepted alive Link to Nucleotide Sequence:NM_026981.2Link to Protein Sequence:NP_081257.1Re-query CCDS DB by Nucleotide ID:NM_026981Re-query CCDS DB by Protein ID:NP_081257Link to BLAST:NP_081257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342512.1 304 Q9D8U7 304 100% 0 0
NP_081257.1 304 Q9D8U7 304 100% 0 0

Chromosomal Locations for CCDS 16682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126154597 126154860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126158410 126158553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126159770 126160028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126164727 126164974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGCTCTCAGTCCATCTGTAGTTCCTCAAGAAAGTAAAGAAGATAATGCAAACTGTGTAGAAACAAAAC
CGTCACAAACCACTTCCATTGCTTCAGAAGACCCCCTTCAAAACTTATGCTTAGCGTCTCAGGAAGTGCT
GCGTAAGGCTCAACAAAGTGGGAGGTCCCGGTGTCGCCAATGTGGTGGCTCAAGGATGTTCTACTGCTAC
ACATGCTGTGTCCCAGTGGGAAACGTGCCCACCGAGCAGATCCCATGTGTGCAGCTTCCATTGAAGATTG
ATATCATTAAGCATCCAAATGAAACAGACGGCAAGAGCACCGCTGTGCACGCAAAGCTCTTAGCGCCCGA
CTCTGTGAACATTTACACATATCCGTGCATTCCGGAGTACGAAGGGAAGGATCACGAGGTTGTACTTGTT
TTTCCTGGGCCTCAGTCTATCTCAATAGAAGATGTCTCTTTCCATCTACAAAAAAGGATTGAAAGTAAGG
GTAGAAACAAAGCTGACAACCTTGATGTGCCACCTCGGAAACTCAAGAGGACTACGGACGAGGAAGGCTG
GGATCTGCATGAGAGCACACGCCAAGGCCCCGAGTTGAAAAGAGTTGTCTTTATTGACAGCACCTGGAGC
CAGACAAACCAGATCGCCTCTGATGAGCGGCTTCGGGAGTTATTACAAGTTGAACTGAGAACAAGAAAAA
CTTGCTTTTGGCGCCATCAAAAAGGGAAGCCAGATACTTTCCTTTCCACAATTGAAGCCATTTATTACTT
CCTAGTAGACTACCATAGTGCCGTGCAGAAAGAGAAGTACAGAGGACAGTATGACAACCTTTTATTCTTC
TACTCTTTTATGTACCGCTTGATAAAGAATGCCAGAGGCTCTGGAGAGAAGGCTAAACCGCAGCTCGTCC
AGTAG

Translation (304 aa):
MALSPSVVPQESKEDNANCVETKPSQTTSIASEDPLQNLCLASQEVLRKAQQSGRSRCRQCGGSRMFYCY
TCCVPVGNVPTEQIPCVQLPLKIDIIKHPNETDGKSTAVHAKLLAPDSVNIYTYPCIPEYEGKDHEVVLV
FPGPQSISIEDVSFHLQKRIESKGRNKADNLDVPPRKLKRTTDEEGWDLHESTRQGPELKRVVFIDSTWS
QTNQIASDERLRELLQVELRTRKTCFWRHQKGKPDTFLSTIEAIYYFLVDYHSAVQKEKYRGQYDNLLFF
YSFMYRLIKNARGSGEKAKPQLVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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