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Report for CCDS16657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16657.1 Public Mus musculus 2 Sord 23 108 98 CCDS HistoryNCBI Gene:20322Re-query CCDS DB by CCDS ID:16657.1Re-query CCDS DB by GeneID:20322See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110551.3 ENSMUSP00000106180.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110551.3Link to Ensembl Protein Viewer:ENSMUSP00000106180.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110551Re-query CCDS DB by Protein ID:ENSMUSP00000106180
Original member Current member NCBI NM_146126.4 NP_666238.1 Accepted alive Link to Nucleotide Sequence:NM_146126.4Link to Protein Sequence:NP_666238.1Re-query CCDS DB by Nucleotide ID:NM_146126Re-query CCDS DB by Protein ID:NP_666238Link to BLAST:NP_666238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666238.1 357 Q64442 357 100% 0 0

Chromosomal Locations for CCDS 16657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122234893 122234958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122246482 122246515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122248799 122248963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122253187 122253346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122256842 122256960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122259065 122259130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122260180 122260355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122263188 122263309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122264041 122264206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCAGCTCCAGCTAAGGGCGAGAACCTGTCCCTGGTGGTGCACGGACCTGGAGACATCCGCCTGGAGA
ACTACCCAATACCTGAGCTCGGCCCAAATGATGTGTTACTAAAGATGCACTCGGTGGGGATTTGCGGCTC
AGATGTTCACTACTGGGAGCATGGACGAATTGGGGACTTTGTTGTGAAAAAGCCAATGGTGCTTGGGCAT
GAGGCTGCTGGAACAGTCACAAAAGTAGGAGAGTTGGTGAAACATCTGAAACCAGGAGATCGGGTTGCCA
TCGAGCCTGGCGTTCCCCGAGAAGTAGATGAGTACTGCAAGATTGGCCGGTACAACCTGACGCCGACTAT
CTTCTTCTGTGCCACGCCCCCGGATGATGGAAACCTCTGCCGATTCTACAAGCACAATGCTGACTTCTGC
TACAAGCTTCCTGACAGTGTCACTTTTGAAGAAGGGGCCCTGATTGAACCTCTCTCTGTGGGGATCTATG
CCTGCCGTCGAGGTTCAGTTTCCCTGGGGAACAAGGTCCTTGTGTGTGGCGCTGGGCCAGTTGGGATGGT
CACTTTGCTTGTGGCCAAAGCAATGGGAGCTGCTCAAGTTGTGGTGACTGACCTATCCGCTTCTCGGTTG
ACCAAAGCCAAGGAAGTTGGAGCAGACTTTACCATCCAGGTTGGCAAAGAGACCCCTCAGGAAATTGCCA
GTAAGGTGGAAAGCCTGCTGGGAAGCAAGCCGGAGGTTACCATTGAGTGCACAGGAGCCGAGTCCTCCGT
CCAGACGGGCATCTATGCCACTCACTCTGGTGGGACCTTGGTGATTGTGGGAATGGGCGCCGAGATGGTC
AATTTACCCCTGGTGCACGCAGCCATTCGGGAAGTGGATATCAAAGGCGTGTTTCGATACTGCAACACGT
GGCCGATGGCAATTTCCATGCTTGCATCGAAGACGTTGAATGTAAAGCCCTTAGTTACCCACAGATTCCC
CCTGGAGAAGGCAGTTGAAGCCTTTGAAACAGCCAAAAAGGGAGTGGGGCTGAAAGTTATGATCAAGTGT
GACCCCAATGACCAAAACCCCTAG

Translation (357 aa):
MAAPAKGENLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGH
EAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNADFC
YKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPVGMVTLLVAKAMGAAQVVVTDLSASRL
TKAKEVGADFTIQVGKETPQEIASKVESLLGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMV
NLPLVHAAIREVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRFPLEKAVEAFETAKKGVGLKVMIKC
DPNDQNP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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