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Report for CCDS16655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16655.1 Public Mus musculus 2 Trim69 23 108 98 CCDS HistoryNCBI Gene:70928Re-query CCDS DB by CCDS ID:16655.1Re-query CCDS DB by GeneID:70928See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036089.7 ENSMUSP00000047627.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036089.7Link to Ensembl Protein Viewer:ENSMUSP00000047627.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036089Re-query CCDS DB by Protein ID:ENSMUSP00000047627
Original member NCBI NM_080510.2 NP_536771.2 Updated not alive Link to Nucleotide Sequence:NM_080510.2Link to Protein Sequence:NP_536771.2Re-query CCDS DB by Nucleotide ID:NM_080510Re-query CCDS DB by Protein ID:NP_536771
Current member NCBI NM_080510.3 NP_536771.2 Accepted alive Link to Nucleotide Sequence:NM_080510.3Link to Protein Sequence:NP_536771.2Re-query CCDS DB by Nucleotide ID:NM_080510Re-query CCDS DB by Protein ID:NP_536771Link to BLAST:NP_536771.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536771.2 500 Q80X56 500 100% 0 0

Chromosomal Locations for CCDS 16655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122160891 122160896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122167555 122168034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122170002 122170097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122173154 122173387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122174240 122174262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122174350 122174474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122178425 122178963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGAGGTATCTTCTCGGCCCCCCTCCAACTTTGATCCAGGCAACTATGTTGAAATGAGTGATCCAACCA
CCACCCATTTACCCTCAAAAGTGGTGATACAAGATCTTACCACGGAGCTACACTGCCCTCTGTGTAACGA
CTGGTTCCGTGATCCGCTGATGCTGACCTGTGGCCACAACTTCTGCCAAGACTGTATTCAAAGCTTCTGG
AAAGTGCATTCAAAGGAAACATTCTGTCCTGACTGTAAGATGCTATGCCAGTATAGCAACTGTACATTCA
ACCTCGTGCTGGAGAAGCTCGTGGAGAAGATTAAGAAGTTACCCCTGCTCAAGGGCCATCCACAGTGCCC
AGAGCATGGAGAGAACCTGAAACTGTTCAGTAAGCCAGAAGGCAAAATGATCTGCTTTCAATGCAAGGAT
GCACGGTTGTCTATGGGGCAGTCTAAGGATTTCCTGCAGATCTCTGAAGCTGTCCGTTTCTTTACGGAGG
AGCTTGCTATCTATCAGAGCCAACTTCAGACAACCCTGAAGGAGCTTCAGTCTCTCAGAACAATTCAGAA
AGATGCTATTTCTGCTTACAAGGACAACAAGATACAACTGCAACAAAACCTTTCCTTGGAGTTTCTAAAG
CTACATCAGTTTCTGCACAACAAAGAAAAGGACATTCTAAATGACCTCCGGGATGAGGGGAAACTCTTGA
ATGAGGAGATGGAGGTGAATCTGAACCAGATTCAGGAGCAGTGTCTTGTTGCCAAAGACATGCTGGCGAC
CATTCAGGCACGGATGGAACAGCAGAACTCCTTCGACTTCCTCACAGACATCACAAAGCTCATAGAGAGC
ATGGAGAAAGGAATGAAGACAATTGTACCTAGACAGCTCATCGCCAAAAAGCTGAGCCTAGGCCGCTTCA
AAGGTCCTATCCAGTATATCATCTGGAAGGAAATGCAGGCTATTCTCTCTCCAGGCCCATCTCAATTAAC
TCTGGATCCTAAAACAGCTCATCCCAATCTGGTGTTATCCAAAAGCCAGACCAGTGTGTGTCACTGTGAT
GTTAAGCAGGTAATGCCTGATGATCCAGAGCGGTTTGATTCAAGTGTGGCTGTACTGGGCTCAAAAGGCT
TCACCTCTGGAAAATGGTACTGGGAAATAGAAGTAGGAAAGAAGACAAAATGGACAATTGGAGTCGTCAG
AGAGTCCATCATTCGGAAGGGGAGCTGCCCTCTGACTCCAGAGCAAGGATTCTGGCTTCTAAGACTAAGA
AACCAAACAGATCTAAAGGCCCTGGATTTGCCCTCCCGTAGTCTGACTCTAGGCGACCTCAGAAGAGTGG
GCGTGTACCTGGATTATGAGGGCGGGCAAGTATCCTTCTACAACGCTACAACCATGACCCATCTTTACAC
CTTTAGCAGTGTTTTCCAGGAGAAACTTTTCCCCTACTTGTGCCCCTGCCTTAATGACGGTGGGGAGAAT
AAAGAACCGTTGCACATCGTACATCCACAGTAA

Translation (500 aa):
MEVSSRPPSNFDPGNYVEMSDPTTTHLPSKVVIQDLTTELHCPLCNDWFRDPLMLTCGHNFCQDCIQSFW
KVHSKETFCPDCKMLCQYSNCTFNLVLEKLVEKIKKLPLLKGHPQCPEHGENLKLFSKPEGKMICFQCKD
ARLSMGQSKDFLQISEAVRFFTEELAIYQSQLQTTLKELQSLRTIQKDAISAYKDNKIQLQQNLSLEFLK
LHQFLHNKEKDILNDLRDEGKLLNEEMEVNLNQIQEQCLVAKDMLATIQARMEQQNSFDFLTDITKLIES
MEKGMKTIVPRQLIAKKLSLGRFKGPIQYIIWKEMQAILSPGPSQLTLDPKTAHPNLVLSKSQTSVCHCD
VKQVMPDDPERFDSSVAVLGSKGFTSGKWYWEIEVGKKTKWTIGVVRESIIRKGSCPLTPEQGFWLLRLR
NQTDLKALDLPSRSLTLGDLRRVGVYLDYEGGQVSFYNATTMTHLYTFSSVFQEKLFPYLCPCLNDGGEN
KEPLHIVHPQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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