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Report for CCDS16612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16612.1 Public Mus musculus 2 Mapkbp1 23 108 98 CCDS HistoryNCBI Gene:26390Re-query CCDS DB by CCDS ID:16612.1Re-query CCDS DB by GeneID:26390See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066058.7 ENSMUSP00000068516.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066058.7Link to Ensembl Protein Viewer:ENSMUSP00000068516.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000066058Re-query CCDS DB by Protein ID:ENSMUSP00000068516
Original member NCBI NM_011941.3 NP_036071.3 Updated not alive Link to Nucleotide Sequence:NM_011941.3Link to Protein Sequence:NP_036071.3Re-query CCDS DB by Nucleotide ID:NM_011941Re-query CCDS DB by Protein ID:NP_036071
Current member NCBI NM_011941.4 NP_036071.3 Accepted alive Link to Nucleotide Sequence:NM_011941.4Link to Protein Sequence:NP_036071.3Re-query CCDS DB by Nucleotide ID:NM_011941Re-query CCDS DB by Protein ID:NP_036071Link to BLAST:NP_036071.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036071.3 1503 Q6NS57-1 1503 99.9335% 0 1

Chromosomal Locations for CCDS 16612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119973052 119973168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119998482 119998573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120010743 120010805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120011002 120011059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120011933 120012103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120012593 120012730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120012912 120013094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120013619 120013779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120014623 120014812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120015343 120015489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120015693 120015868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120016780 120016871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120017140 120017265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120017581 120017651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120017756 120017877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120018299 120018374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120018488 120018599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120018922 120018985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120019226 120019360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120019552 120019688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120019878 120019933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120021084 120021320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120021731 120021897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120022090 120022235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120022337 120022531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120022696 120022780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120023032 120023315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120023543 120024139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120024518 120024603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120025104 120025331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4512 nt):
ATGATGGCTGGAGAAGGGTCAACCATTACTAGCCGTATCAAGAACTTGCTGAGGTCTCCATCCATCAAAT
TACGCAGAAGTAAAGCAGGAAACCGGAGAGAGGACCTCAGCTCCAAGGTAACCTTGGAGAAGGTCCTGGG
AGTAACAGTATCTGGAGGAAGAGGACTTGCTTGTGACCCCCGATCTGGCTTAGTTGCCTACCCAGCAGGG
TGTGTGGTCGTCCTCTTCAATCCCCGGAAGCACAAACAGCACCACATCCTCAACAGCTCCAGGAAAACCA
TTACTGCCCTTGCCTTCTCCCCTGATGGCAAGTACTTGGTCACTGGAGAGAGTGGGCACATGCCTGCCGT
GCGGGTTTGGGATGTGGCTGAACGTAGCCAGGTGGCAGAGCTACAGGAGCATAAGTATGGTGTGGCTTGT
GTGGCTTTCTCCCCAAGTGCCAAGTACATTGTGTCTGTGGGCTACCAGCATGACATGATTGTCAACGTGT
GGGCCTGGAAGAAAAACATTGTAGTGGCCTCCAACAAAGTATCCAGTCGGGTAACCGCAGTGTCCTTTTC
TGAAGACTGCAGCTACTTTGTCACTGCAGGCAACCGGCACATCAAATTCTGGTACCTGGATGACAGTAAG
ACCTCAAAGGTGAACGCCACTGTGCCCCTGCTGGGCCGCTCGGGGCTGCTGGGGGAGCTGAGGAACAACC
TGTTCACTGATGTGGCCTGTGGCCGAGGGGAAAAGGCTGATAGCACTTTCTGTATCACGTCGTCGGGGCT
GCTGTGCGAGTTCAGCGATCGCAGGCTTCTGGACAAATGGGTGGAGCTAAGGACCACTGTGGCCCACTGC
ATCTCTGTCACCCAAGAATACATCTTCTGTGGCTGTGCTGATGGCACGGTGCGCCTTTTCAATCCTTCCA
ACCTGCACTTCCTCAGTACCCTACCTAGACCCCATGCTCTTGGAACAGACATTGCCAGCATCACTGAGGC
CAGTCGCCTCTTTTCTGGAGGGGTCAATGCAAGGTACCCAGACACCATTGCCTTGACCTTCGATCCAACT
AATCAGTGGCTATCTTGTGTATACAACGACCACAGCATATATGTTTGGGATGTGAGGGACCCCAAGAAAG
TGGGGAAGGTGTACTCCGCTCTGTATCACTCCTCCTGTGTCTGGAGTGTGGAGGTCTACCCTGAGATCAA
GGACAGTCACCAGGCCTGTCTTCCCCCCAGTTCCTTTATTACTTGCTCCTCAGACAACACCATCCGCCTG
TGGAACACAGAGAGCTCTGGGGTACATGGCTCTACCCTGCACCGTAACATCCTCAGCAATGATCTCATTA
AGATCATCTATGTGGATGGGAACACTCAGGCTTTGTTGGACACTGAGCTGCCTGGAGGAGACAAAGCTGA
TGGGTCGCTGATGGACCCCCGAGTGGGCATCCGGTCCGTGTGTATTAGCCCCAATGGACAGCACCTGGCC
TCCGGAGACCGCATGGGGACACTTAGGATACATGAACTGCAGTCCCTGAGTGAGATGCTGAAAGTGGAGG
CCCACGACTCTGAGATCTTGTGCCTGGAGTACTCTAAGCCAGACACAGGTTTGAAACTGCTAGCATCGGC
AAGCCGGGACCGTCTGATCCACGTGCTGGATGCTGGCCGGGAATATAGTCTACAGCAGACACTGGATGAG
CATTCATCTTCCATCACTGCTGTCAAGTTTGCAGCCAGTGATGGGCAAGTGCGAATGATCAGCTGTGGTG
CAGACAAGAGCATTTACTTCCGAACTGCACAGAAGTCTGGAGAAGGAGTACAGTTTACACGAACGCACCA
CGTGGTACGGAAGACAACTCTCTATGACATGGACGTGGAGCCCAGCTGGAAGTACACGGCCATCGGCTGC
CAAGACCGGAATATTCGGATCTTTAACATTAGCAGCGGAAAGCAGAAAAAGCTGTTTAAAGGGTCACAGG
GTGAAGATGGCACTCTCATTAAGGTGCAGACAGACCCCTCAGGGATCTACATTGCCACTAGCTGTTCCGA
TAAGAATCTCTCCATTTTTGACTTCTCCTCAGGCGAGTGTGTGGCCACCATGTTTGGCCACTCAGAGATT
GTCACTGGCATGAAATTTAGTAACGATTGCAAACATCTCATCTCTGTGTCAGGGGACAGCTGCATCTTTG
TCTGGCGTCTGAGCTCTGAGATGACCATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCG
AGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCACCATGCTCCAGTG
GTACCCCCTTCTGGACCAGCTCTTTCCTCAGACAGTGACAAGGAGGGAGAAGATGAGGGTACTGAAGAAG
AAGAACTGCCAGCTCTGCCCATCCTTAGCAAGAGCACCAAGAAAGAACTAGCCTCAGGCTCTAGTCCAGC
CTTGCTCCGAAGCCTGTCCCACTGGGAAATGAGTCGGGCACAAGAGACCATGGAGTACCTGGACCCAGCT
CCTGTAGCTAACACAGGACCTAAAAGAAGAGGGCGCTGGGCTCAGCCAGGCGTGGAGCTGAGTGTTCGCT
CCATGTTGGACCTGAGACAGATAGAGACCTTAGCCCCAAGCCCTCGAGGCCCCAGCCAGGACTCACTGGC
TGTGTCCCCAGCTGGTCCTGGGAAGCATGGTCCACAGGGCCCTGAGCTGTCATGTGTCAGTCAGAATGAA
AGGGCCCCTCGGCTTCAGACCTCCCAACCCTGCTCCTGCCCCCACATTATCCAATTGTTGTCACAAGAGG
AAGGAGTCTTTGCCCAAGATCTGGAGCCTGCACCCATTGAAGATGGTATTGTCTACCCGGAACCCAGTGA
CAGCCCTACCATGGATACCAGTGCGTTTCAGGTGCAGGCTCCAACCGGAGGATCCCTAGGAAGAATGTAC
CCAGGCAGCAGGGGCTCAGAAAAGCACAGTCCTGACAGTGCATGCTCTGTGGATTACAGCAGCAGCCGGC
TTTCCAGCCCTGAACACCCTAATGAAGACTCTGAGAGCACAGAGCCCCTAAGTGTGGATGGCATCTCCTC
AGACCTGGAAGAGCCAGCCGAGGGTGATGAAGACGAGGAAGAAGAGGGAGGCACTGGCCTCTGTGGGCTA
CAAGAAGGCGGCCCTCATACCCCAGATCAGGAACAGTTTCTAAAACAGCACTTTGAGACTCTGGCCAATG
GGACTGCTCCAGGGGGCCCAGCACGGGTGCTAGAGAGGACAGAGTCTCAGAGCATCTCATCACGATTCCT
TCTGCAAGTGCAGACCTCCCCACTCAGGGAACCATCCCTATCCTCCTCAGGCTTGGCCCTGACGTCCAGA
CCTGACCAGGTATCACAGGTGTCTGGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCC
CAGAAATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGCAGGTGGCTCCTGTGCTGTTGACACGACGGCA
TAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAA
GCCCAGTCTGTGCATAGTTTGGTACCACAGGATGAGGTGCCTTCATCACGTCCACTGCTCTTCCAGGAGG
CAGAGACCCAGGGCAGCTTAGGATCCCTGCCACAAGCTGGTGGCTGCTCATCTCAGCCCCACTCCTACCA
GAACCACACCACCAGTTCTATGGCCAAGCTAGCGCGTAGTATTTCTGTTGGCGAGAATCCGGGCCTGGCA
ACTGAACCTCAAGCTCCTGTACCGATCCGAATCTCACCATTCAACAAACTAGCTCTGCCTAGCAGGGCTC
ACCTTGTCCTGGACATCCCCAAACCACTTCCTGACCGTCCTACTCTGACCACATTCTCACCTGTATCCAA
GGGCCTGGCCCACAATGAAACAGAACAATCGGGCCCCTTGGTGAGCCTAGGAAAGGCTCATACTACAGTT
GAAAAGCACTCCTGTTTAGGGGAGGGTACTACTCATAAATCTAGGACAGAGTGCCAGGCTTATCCTGGAC
CCAACCACCCCTGTGCCCAGCAACTGCCAGTCAACAACCTTCTCCAAGGCCCTGAGAGCTTGCAGCCCCT
GTCCCCTGAGAAGACTCGTAACCCAGTGGAAAGCAGCAGGCCAGGGGTAGCCCTGAGCCAGGACTCAGAA
CTGGCCTTGAGTCTGCAACAGTGTGAACAGCTCGTGGCAGAGCTCCAGGGGAATGTACGCCAGGCAGTGG
AGCTCTACCGAGCGGTGACCAGCTATAAGACACCTTCGGCAGAGCAAAGTCACATCACCCGTCTCCTGAG
AGACACCTTCTCTTCGGTGCGACAGGAGCTCGAGGTTCTGGCTGGGGCGGTGCTGTCCAGCCCAGGTGGC
AGCCCTGGGGCTGTGGGGGCTGAGCAGACGCAGGCCCTGTTGGAGCAATACTCCGAGCTACTGCTAAGAG
CTGTGGAGCGGCGCATGGAGCGTAGACTCTGA

Translation (1503 aa):
MMAGEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGVTVSGGRGLACDPRSGLVAYPAG
CVVVLFNPRKHKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAERSQVAELQEHKYGVAC
VAFSPSAKYIVSVGYQHDMIVNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSK
TSKVNATVPLLGRSGLLGELRNNLFTDVACGRGEKADSTFCITSSGLLCEFSDRRLLDKWVELRTTVAHC
ISVTQEYIFCGCADGTVRLFNPSNLHFLSTLPRPHALGTDIASITEASRLFSGGVNARYPDTIALTFDPT
NQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYPEIKDSHQACLPPSSFITCSSDNTIRL
WNTESSGVHGSTLHRNILSNDLIKIIYVDGNTQALLDTELPGGDKADGSLMDPRVGIRSVCISPNGQHLA
SGDRMGTLRIHELQSLSEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDE
HSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGEGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGC
QDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEI
VTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGIKQQGPTSPQRASGAKQHHAPV
VPPSGPALSSDSDKEGEDEGTEEEELPALPILSKSTKKELASGSSPALLRSLSHWEMSRAQETMEYLDPA
PVANTGPKRRGRWAQPGVELSVRSMLDLRQIETLAPSPRGPSQDSLAVSPAGPGKHGPQGPELSCVSQNE
RAPRLQTSQPCSCPHIIQLLSQEEGVFAQDLEPAPIEDGIVYPEPSDSPTMDTSAFQVQAPTGGSLGRMY
PGSRGSEKHSPDSACSVDYSSSRLSSPEHPNEDSESTEPLSVDGISSDLEEPAEGDEDEEEEGGTGLCGL
QEGGPHTPDQEQFLKQHFETLANGTAPGGPARVLERTESQSISSRFLLQVQTSPLREPSLSSSGLALTSR
PDQVSQVSGEQLKGSGATPPGAPPEMEPSSGNSGPKQVAPVLLTRRHNNLDNSWASKKMAATRPLAGLQK
AQSVHSLVPQDEVPSSRPLLFQEAETQGSLGSLPQAGGCSSQPHSYQNHTTSSMAKLARSISVGENPGLA
TEPQAPVPIRISPFNKLALPSRAHLVLDIPKPLPDRPTLTTFSPVSKGLAHNETEQSGPLVSLGKAHTTV
EKHSCLGEGTTHKSRTECQAYPGPNHPCAQQLPVNNLLQGPESLQPLSPEKTRNPVESSRPGVALSQDSE
LALSLQQCEQLVAELQGNVRQAVELYRAVTSYKTPSAEQSHITRLLRDTFSSVRQELEVLAGAVLSSPGG
SPGAVGAEQTQALLEQYSELLLRAVERRMERRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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