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Report for CCDS16601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16601.1 Public Mus musculus 2 Chac1 23 108 98 CCDS HistoryNCBI Gene:69065Re-query CCDS DB by CCDS ID:16601.1Re-query CCDS DB by GeneID:69065See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028780.3 ENSMUSP00000028780.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028780.3Link to Ensembl Protein Viewer:ENSMUSP00000028780.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028780Re-query CCDS DB by Protein ID:ENSMUSP00000028780
Original member Current member NCBI NM_026929.4 NP_081205.1 Accepted alive Link to Nucleotide Sequence:NM_026929.4Link to Protein Sequence:NP_081205.1Re-query CCDS DB by Nucleotide ID:NM_026929Re-query CCDS DB by Protein ID:NP_081205Link to BLAST:NP_081205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081205.1 223 Q8R3J5 223 100% 0 0

Chromosomal Locations for CCDS 16601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119351403 119351636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119352357 119352392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119353189 119353590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGAAGCAGGAGTCCGCATCCCAGAGCACTCCGCCTCCTTCACTGTCCCCTGCACCATCATCCGCGCAGC
CT
TCCTGGGGGGATGGCGACCCCCAAGCCCTGTGGATTTTCGGGTACGGCTCCCTAGTGTGGAAGCCGGA
C
TTTGCCTATAGTGACAGCCGTGTGGGCTTCGTTCGTGGCTATAGCCGACGGTTCTGGCAGGGAGACACC
TTC
CATAGGGGCAGCGACAAGATGCCTGGCCGAGTGGTGACCCTCCTTGAAGACCGTGAGGGCTGCACTT
GG
GGTGTGGCATACCAAGTTCGAGGGGAGCAGGTGAACGAGGCCCTGAAGTACCTGAATGTGAGGGAAGC
C
GTGCTTGGTGGCTATGACACTAAGGAAGTCACCTTTTATCCTCAAGACACCCCTGACCAACCCCTCACA
GCA
CTGGCCTATGTGGCCACCCCACAGAACCCTGGCTACCTGGGCCCTGCTCCTGAAGAGGTCATTGCCA
CA
CAGATCCTTGCTTGCCGAGGCTTCTCTGGTCACAACCTTGAGTACTTATTGCGTTTGGCAGACTTCAT
G
CAGCTCTGTGGGCCTCAGGCACAAGATGAGCACCTGGAAGCCATTGTGGACGCCGTAGGAACCCTGCTA
CCC
TGCTCTTACCTACCTGAGCAGCCTCTGGCACTGACCTGA


Translation (223 aa):
MKQESASQSTPPPSLSPAPSSAQPSWGDGDPQALWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDT
F
HRGSDKM
PGRVVTLLEDREGCTWGVAYQVRGEQVNEALKYLNVREAVLGGYDTKEVTFYPQDTPDQPLT
A
LAYVATPQNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLEAIVDAVGTLL
P
CSYLPEQPLALT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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