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Report for CCDS16575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16575.1 Public Mus musculus 2 Gpr176 23 108 98 CCDS HistoryNCBI Gene:381413Re-query CCDS DB by CCDS ID:16575.1Re-query CCDS DB by GeneID:381413See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 16575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039160.2 ENSMUSP00000037586.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039160.2Link to Ensembl Protein Viewer:ENSMUSP00000037586.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000039160Re-query CCDS DB by Protein ID:ENSMUSP00000037586
Original member Current member NCBI NM_201367.3 NP_958755.1 Accepted alive Link to Nucleotide Sequence:NM_201367.3Link to Protein Sequence:NP_958755.1Re-query CCDS DB by Nucleotide ID:NM_201367Re-query CCDS DB by Protein ID:NP_958755Link to BLAST:NP_958755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958755.1 515 Q80WT4 515 100% 0 0

Chromosomal Locations for CCDS 16575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118279229 118280354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118283906 118284158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118373019 118373187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGGGCACAACAGCAGCTGGGTGTCACCGAACACCAGCCACCCGCGCAACACGTCGGGCGCCGAGGCTG
GCGCCAACCTCAGCGCGTTCGGGGAGCTGAGCGAGGCTCAGCTGTACCGCCAGTTCACCACCACCGTGCA
GGTCGTCATCTTCATTGGCTCGCTACTGGGAAACTTCATGGTGTTATGGTCAACTTGCCGCACAACAGTG
TTCAAATCTGTCACCAACAGGTTCATTAAAAACCTGGCCTGCTCCGGGATTTGTGCCAGTGTGGTCTGTG
TGCCCTTCGACATCATCCTGAGCAGCAGCCCTCACTGTTGCTGGTGGATCTATACGATGCTCTTCTGCAA
GGTGCTCAAATTCCTACACAAGGTGTTCTGCTCTGTGACTGTCCTCAGTTTTCCTGCTATTGCCCTGGAC
AGGTACTATTCAGTCCTTTATCCTCTGGAGAGAAAAATATCTGATGCCAAGTCTCGGGAGCTAGTGATGT
ACATCTGGGCTCATGCAGTGGTGGCCAGTGTCCCTGTGTTTGCTGTGACCAATGTCGCTGACATCTATGC
TATGTCCACCTGCACGGAAGTCTGGAGCAACTCCTTGGGCCACCTGGTGTATGTTCTGATCTACAATGTC
ACCACAGTCATTGTGCCCGTGGCTGTGGTATTTCTCTTTCTCATCCTGATCCGGAGGGCCCTGAGTGCCA
GCCAGAAGAAGAAAGTCATAATTGCTGCACTGAGGACCCCACAGAACACCATCTCTATCCCCTATGCTTC
CCAGCGAGAGGCAGAGCTACATGCCACCCTGCTCTCCATGGTGACAGTTTTCATTCTCTGCAGTGTACCC
TATGCCACCCTGGTTGTCTACCAGACTGTGCTCAATGTACCTAACACCTCTGTCTTCTTGCTTCTCACGG
CCATTTGGCTGCCCAAAGTCTCTCTGTTGGCCAACCCTGTGCTCTTCTTAACTGTGAACAAATCGGTACG
CAAGTGCTTGGTGGGGACCCTGGTGCAGTTGCACCACCGGTACAGTCGCCGCAATGTGGTTAGTACAGGG
AGTGGGGTGGCTGAGCCCAGCCTTGAGCCCAGCATGCGCTCTGGTAGCCAGCTCTTGGAGATGTTCCACA
TTGGGCAGCAACAGATCTTTAAGCCCTCGGAGGATGAGGAAGAAAGTGAGGCCAAGTATCTCGGCTCAGC
CGATTTCCAGGCAAAGGAGGTGCTCACTTCCTGCCCAGAGGGCGAGCAGGAGCCACCACAGCTTGCACCG
TCTGTGCCACCTCCAGGCACAGTGGACTCTGAACCTCGGGTGTCCCCAGTAGCTCCCATGGAATCTGGGA
TATTTCCTGATAAGTATTCCCTGCAGTTTGGCTTTGGGCCTTTTGAGTTACCCCCTCAGTGGCTCTCTGA
GACCCGAAATAGCAAGAAGAGGCTGCTTCCCCCACTGGGCAATACCCCAGAAGAGCTGATCCAGACAAAG
GTGCCCAGAGTGAACAGGGTGGAACGGAAGATGAGCAGAAACAATAAAGTGAGCATTTTTCCAAAGGTAG
ACTCCTAG

Translation (515 aa):
MGHNSSWVSPNTSHPRNTSGAEAGANLSAFGELSEAQLYRQFTTTVQVVIFIGSLLGNFMVLWSTCRTTV
FKSVTNRFIKNLACSGICASVVCVPFDIILSSSPHCCWWIYTMLFCKVLKFLHKVFCSVTVLSFPAIALD
RYYSVLYPLERKISDAKSRELVMYIWAHAVVASVPVFAVTNVADIYAMSTCTEVWSNSLGHLVYVLIYNV
TTVIVPVAVVFLFLILIRRALSASQKKKVIIAALRTPQNTISIPYASQREAELHATLLSMVTVFILCSVP
YATLVVYQTVLNVPNTSVFLLLTAIWLPKVSLLANPVLFLTVNKSVRKCLVGTLVQLHHRYSRRNVVSTG
SGVAEPSLEPSMRSGSQLLEMFHIGQQQIFKPSEDEEESEAKYLGSADFQAKEVLTSCPEGEQEPPQLAP
SVPPPGTVDSEPRVSPVAPMESGIFPDKYSLQFGFGPFELPPQWLSETRNSKKRLLPPLGNTPEELIQTK
VPRVNRVERKMSRNNKVSIFPKVDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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