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Report for CCDS16521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16521.1 Public Mus musculus 2 Or4k37 23 108 98 CCDS HistoryNCBI Gene:257979Re-query CCDS DB by CCDS ID:16521.1Re-query CCDS DB by GeneID:257979See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090326.1 ENSMUSP00000087798.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090326.1Link to Ensembl Protein Viewer:ENSMUSP00000087798.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000090326Re-query CCDS DB by Protein ID:ENSMUSP00000087798
Original member Current member EBI ENSMUST00000208176.2 ENSMUSP00000151304.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208176.2Link to Ensembl Protein Viewer:ENSMUSP00000151304.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208176Re-query CCDS DB by Protein ID:ENSMUSP00000151304
Original member Current member NCBI NM_001005568.1 NP_001005568.1 Accepted alive Link to Nucleotide Sequence:NM_001005568.1Link to Protein Sequence:NP_001005568.1Re-query CCDS DB by Nucleotide ID:NM_001005568Re-query CCDS DB by Protein ID:NP_001005568Link to BLAST:NP_001005568.1

Chromosomal Locations for CCDS 16521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111328421 111329338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAAGACTCTAATCAAACTGTGGTTTCTGAGTTTATTTTTCAGGGACTGTGTACCTCAAGGCAACTTG
AGATCTTTCTCTTATTACCATTTTCTGTCCTCTATCTGGTGACTTTGGTAGGAAACCTCTTTGTAGTGAT
ATTGATCATCATTGATCATCATCTCCATTCTCCCATGTACTTCCTGTTAGCTAATCTATCATTTGTTGAC
TTCTGCCTTTCCTCAGTAAATACACCCAAACTGACCATAGATCTCCTAAAAGAAAATAAAACCATTTCCT
TTGGCGGCTGCATGAGCCAGATCCTCTGTGTGCATTTCTTTGGAGGAAGTGAGATGGTGCTTCTTGTAAC
AATGGCCTATGACCGGTATGTGGCCATCTGCAGGCCACTCCACTACAGCAGCATCATGGACAGACAGAAG
TGCATCTGGCTCGTTGTGATATCATGGATTGTTGGATTTGTGCATGCCATTAGTCAGTTGCTCTTGATTT
TGGATCTACCATTCTGTGGACCTAGAGTGATAGACAGCTTTTTCTGTGATATTCCTTTGGTGATGAAATT
AGCCTGCATGAATACTGATACTCTGGAAATCCTAATAAATGCTGACAGTGGCATTTTAGCAACTTCTTGT
TTCACTCTCTTACTGATATCTTATACTTATATTCTATTAACTGTTCAACATCGCTCTAAAGATGGCTCAT
CAAAAGCACTATCCACATGCACATCCCATATCATAGTGGTTCTGCTGTTCTTTGGGCCCATCATTTTTAT
CTATCTGTGGCCAGTAAACATCACTTGGGTGGACAAGTTTCTTGCTGTGTTTTATACAGTCATCACACCT
CTCCTGAATCCAGCAATCTATACACTGAGAAATAAAGATATTAAAAATGCTATAAAGAAACTGACAAATC
ACATGTGA

Translation (305 aa):
MEDSNQTVVSEFIFQGLCTSRQLEIFLLLPFSVLYLVTLVGNLFVVILIIIDHHLHSPMYFLLANLSFVD
FCLSSVNTPKLTIDLLKENKTISFGGCMSQILCVHFFGGSEMVLLVTMAYDRYVAICRPLHYSSIMDRQK
CIWLVVISWIVGFVHAISQLLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATSC
FTLLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVNITWVDKFLAVFYTVITP
LLNPAIYTLRNKDIKNAIKKLTNHM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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