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Report for CCDS16393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16393.1 Public Mus musculus 2 Or4c12b 23 108 98 CCDS HistoryNCBI Gene:258979Re-query CCDS DB by CCDS ID:16393.1Re-query CCDS DB by GeneID:258979See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057369.1 ENSMUSP00000060602.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057369.1Link to Ensembl Protein Viewer:ENSMUSP00000060602.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000057369Re-query CCDS DB by Protein ID:ENSMUSP00000060602
Original member Current member NCBI NM_146977.2 NP_667188.2 Accepted alive Link to Nucleotide Sequence:NM_146977.2Link to Protein Sequence:NP_667188.2Re-query CCDS DB by Nucleotide ID:NM_146977Re-query CCDS DB by Protein ID:NP_667188Link to BLAST:NP_667188.2

Chromosomal Locations for CCDS 16393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89816328 89817260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAATGACACTGAACACATGGAGAATAAAAGGAACGTGACTGAGTTCATCTTGATAGGTCTTACACAGA
ACCCCCAAATGCAGAAAGTAGTGTTCGTGACATTTTTGCTTCTGTACATGATAACAATTTCAGGCAACCT
GCTCATTGTGGTCACTGTCATCAACAGCCAGGCTCTGAATTCCCCCATGTATTTCTTCCTGAGCCACCTC
TCCTTGATAGATACAATTTACACCTCTTCTTCAGCTCCAAAGCTGATTGCGGACTCCCTTCAAGAGAACA
AAGTCATCTCCTTTAATGGATGCATGGCTCAAGTCTATGCAGAGCACATTTTTGGTGCTACTGAGATCAT
CCTGTTGACAGTGATGGCTTATGACCGCTATGTGGCCATCTGCAAACCTCTGCACTATATGACCATCATG
AGCCACAAGCTATGCATTCTCCTGGTGGGGGTAGCCTGGACTGGAGGATTTCTCCATGCAACTATTCAGA
TCCTTTTTACAGTGTGGCTGCCCTTCTGTGGCCCCAACATCATAGACCATTTTATGTGTGACTTGTACCC
ATTGTTGGAACTTGTTTGCATGGACACACACACTCTTGGTCTCTTTGTTGCTGCCAACAGTGGGTTCATC
TGCCTATTTAATTTCCTGCTCTTGATGGGATCCTATGTGATCATCTTGCGCTCTTTAAAGAACTATAGCT
TAGAAGGCAGGCGCAAAGCTCTCTCCACCTGTGTGTCACACATCACAGTAGTTGTTTTATCCTTTATTCC
TTGCATATTTGTATATCTACGTCCAGTGACCACTCTGCCAATTGATAAAGCTGTTGCAGTCTTTTATACT
TTGGTGGCCCCTCTACTGAATCCTTTAATCTACACCCTCAGAAATTCTGAGGTAAAAAATGCAATAAAGA
AGCTCTGGAGGAAAAAAATATAA

Translation (310 aa):
MNDTEHMENKRNVTEFILIGLTQNPQMQKVVFVTFLLLYMITISGNLLIVVTVINSQALNSPMYFFLSHL
SLIDTIYTSSSAPKLIADSLQENKVISFNGCMAQVYAEHIFGATEIILLTVMAYDRYVAICKPLHYMTIM
SHKLCILLVGVAWTGGFLHATIQILFTVWLPFCGPNIIDHFMCDLYPLLELVCMDTHTLGLFVAANSGFI
CLFNFLLLMGSYVIILRSLKNYSLEGRRKALSTCVSHITVVVLSFIPCIFVYLRPVTTLPIDKAVAVFYT
LVAPLLNPLIYTLRNSEVKNAIKKLWRKKI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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