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Report for CCDS16369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16369.1 Public Mus musculus 2 Or4c120 23 108 98 CCDS HistoryNCBI Gene:258893Re-query CCDS DB by CCDS ID:16369.1Re-query CCDS DB by GeneID:258893See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188861.2 ENSMUSP00000140442.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188861.2Link to Ensembl Protein Viewer:ENSMUSP00000140442.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188861Re-query CCDS DB by Protein ID:ENSMUSP00000140442
Original member Current member EBI ENSMUST00000216961.1 ENSMUSP00000149236.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216961.1Link to Ensembl Protein Viewer:ENSMUSP00000149236.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216961Re-query CCDS DB by Protein ID:ENSMUSP00000149236
Original member Current member EBI ENSMUST00000217054.1 ENSMUSP00000150915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217054.1Link to Ensembl Protein Viewer:ENSMUSP00000150915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217054Re-query CCDS DB by Protein ID:ENSMUSP00000150915
Original member Current member NCBI NM_146891.2 NP_667102.2 Accepted alive Link to Nucleotide Sequence:NM_146891.2Link to Protein Sequence:NP_667102.2Re-query CCDS DB by Nucleotide ID:NM_146891Re-query CCDS DB by Protein ID:NP_667102Link to BLAST:NP_667102.2

Chromosomal Locations for CCDS 16369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89170275 89171210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAACAACCAGAGCTGTGTCACTGAGTTCATATTCCTGGGACTTTCACAGAACTCAAAAGTTGAGAAAA
TACTGTTTTTTATATTTTTGTTGATCTATCTTGCAACTATTGGGGGCAACATGATTATTGTGGTGACCAT
CATCTACAGCCCTGCACTGCTGGGCTCCCCAATGTACTTCTTCTTGATATTCCTGTCCTTACTGGATGCT
TGCACTTCTTCCACTGTCACCCCCAAGATGATTGTAGACTTCTTCTATGATAGGAAGACCATCTCCTTTG
AATGTTGCATGACACAACTGTTTGCTGTGCACTTCTTCACTGGGATGGAGGTGATAGTACTGTCAGCCAT
GGCTTATGACCGCTATGTGGCCATTTGCAAGCCTCTTCACTACTCTTCCATCATGAACCGGAGGCTCTGT
GGCAATCTTGTGATGGTGTCCTGGGCAGGAGGCTTTTTGCATTCTATCATACAAATTATATTCATGTTGC
AGCTGCCCTTCTGTGGACCCAATGTCATTGATCATTACATGTGTGACTTGTTCCCATTACTGAAGCTTGC
CTGCACTGACACCTATATATTTGTCATTTTGGTGTTTGCCAACAGTGGGTCTATCTGCATCATAATCTTC
TCTATTTTGCTTGTCTCCTATGGTGTCATCTTGTACTCTCTGAGAGCCCACAGCTCTGAAGGGAAATTTA
AAGCCCTCTCAACCTGTGGATCCCATATTATTGTTGTGGTTTTGTTTTTTGTCCCATGCATATTAACATA
TGCACGACCTATATCTGCATTTTCCTTTGAGAAAAATGCTGTTGTATTTACCACAGTGTTGACCCCATTG
CTCAATTCTGTAGTTTATACTTTCAGGAATAAGGAAATGAAGAATGCCATCAGGAAAATGTGGAAGAAAC
TGATTGCAGTTTCTGATAAACACTAA

Translation (311 aa):
MNNQSCVTEFIFLGLSQNSKVEKILFFIFLLIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDA
CTSSTVTPKMIVDFFYDRKTISFECCMTQLFAVHFFTGMEVIVLSAMAYDRYVAICKPLHYSSIMNRRLC
GNLVMVSWAGGFLHSIIQIIFMLQLPFCGPNVIDHYMCDLFPLLKLACTDTYIFVILVFANSGSICIIIF
SILLVSYGVILYSLRAHSSEGKFKALSTCGSHIIVVVLFFVPCILTYARPISAFSFEKNAVVFTTVLTPL
LNSVVYTFRNKEMKNAIRKMWKKLIAVSDKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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