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Report for CCDS16344.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16344.2 Public Mus musculus 2 Or4a66 23 108 98 CCDS HistoryNCBI Gene:258456Re-query CCDS DB by CCDS ID:16344.2Re-query CCDS DB by GeneID:258456See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16344.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104892.1 ENSMUSP00000100488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104892.1Link to Ensembl Protein Viewer:ENSMUSP00000100488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000104892Re-query CCDS DB by Protein ID:ENSMUSP00000100488
Original member Current member EBI ENSMUST00000216928.1 ENSMUSP00000149100.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216928.1Link to Ensembl Protein Viewer:ENSMUSP00000149100.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216928Re-query CCDS DB by Protein ID:ENSMUSP00000149100
Original member Current member EBI ENSMUST00000216977.1 ENSMUSP00000149902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216977.1Link to Ensembl Protein Viewer:ENSMUSP00000149902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216977Re-query CCDS DB by Protein ID:ENSMUSP00000149902
Original member Current member NCBI NM_146464.2 NP_666675.2 Accepted alive Link to Nucleotide Sequence:NM_146464.2Link to Protein Sequence:NP_666675.2Re-query CCDS DB by Nucleotide ID:NM_146464Re-query CCDS DB by Protein ID:NP_666675Link to BLAST:NP_666675.2

Chromosomal Locations for CCDS 16344.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88700383 88701327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAAAATCATAAAAATGTCACAGAGTTCATTTTCATGGGTCTTTGGCAGAATAGACAAATAGAGCTGC
TGTTCTTTCTCTTGTTCCTGCTTTGCTATCTGGCTATCTTAATGGGGAACTCTGTCATCCTATTCACCAT
CACCTGCAGCCACCTAATAGAACAACCAATGTATTATTTTCTCTGCCATCTTTCCCTCATGGACCTCTGC
TACACCTCTACTGTGATTCCCAGGCTCATCAGAGACTTGGCCACAACAAGAAAAAACATTTCCTATAATG
AGTGCATGACCCAGCTCTTCACTTCCCACTTGCTGGCAGGTGTGGAAATCTTCATCCTGGTGTCCATGGC
CTTGGACCGCTATGTTGCCATTGTCAAGCCCCTGCACTACATGGTTATCATGAGCAGGAAGAGATGTGAT
ATGTTGATTGTCACGGCCTGGATACTGGGGTTCTGGCACTCCATTGCTTTACTACTGATGGTGCTCAGTC
TGCCATTCTGTGGTCCCAACCACATCAATCACTACTTGTGTGACATCAAGCCTCTTCTGAAATTGGTCTG
TAAAGACGTTCATGTTGTAAGTATCTTAGCAATTGCCAACTCTGGGATGGTGCTTTTTGCTATTTTTATT
GTACTACTTGCCTCTTACATACTCATATTGTATTCTCTGAGGACAAGATCATCTGCAGGGAAGCGCAAAG
CACTCTCTACCTGTAGTTCACACATAATGGTAGTAGTTTTATTTTTTGGGCCCTGTATTTATATCTATAT
TTTACCCGCAGGAAGTGAGAACAAGGATAAGGAAATTTCTGTGTTTTACACTGTGATTGCCCCAATGTTG
AATCCCCTTATCTATACTCTGAGAAACAGTGAGATGAAAAGTGCCATGCACAAGGTGTGGTCTCGGCTGT
CACTCAGAGTTGAAGTAAGTGAAAGAATATTGTGA

Translation (314 aa):
MENHKNVTEFIFMGLWQNRQIELLFFLLFLLCYLAILMGNSVILFTITCSHLIEQPMYYFLCHLSLMDLC
YTSTVIPRLIRDLATTRKNISYNECMTQLFTSHLLAGVEIFILVSMALDRYVAIVKPLHYMVIMSRKRCD
MLIVTAWILGFWHSIALLLMVLSLPFCGPNHINHYLCDIKPLLKLVCKDVHVVSILAIANSGMVLFAIFI
VLLASYILILYSLRTRSSAGKRKALSTCSSHIMVVVLFFGPCIYIYILPAGSENKDKEISVFYTVIAPML
NPLIYTLRNSEMKSAMHKVWSRLSLRVEVSERIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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