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Report for CCDS16342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16342.1 Public Mus musculus 2 Or4s2b 23 108 98 CCDS HistoryNCBI Gene:329460Re-query CCDS DB by CCDS ID:16342.1Re-query CCDS DB by GeneID:329460See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081697.1 ENSMUSP00000080399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081697.1Link to Ensembl Protein Viewer:ENSMUSP00000080399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081697Re-query CCDS DB by Protein ID:ENSMUSP00000080399
Original member Current member NCBI NM_001011517.2 NP_001011517.2 Accepted alive Link to Nucleotide Sequence:NM_001011517.2Link to Protein Sequence:NP_001011517.2Re-query CCDS DB by Nucleotide ID:NM_001011517Re-query CCDS DB by Protein ID:NP_001011517Link to BLAST:NP_001011517.2

Chromosomal Locations for CCDS 16342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88677857 88678813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGCCTCAAGGACTTATTCCATGGAAGAAGTAAATAATGTCACTGAATTCATTTTCTTGGGTCTTTCTC
AGAACCCTGAGGTTGAAAAAGTGTGCTTTGTGGTGTTCTCCTTCTTTTACATGGTCATTCTGCTAGGAAA
CCTCCTCATCATGTTGACAGTTTGCAGTGGCAATCTTTTCAAGTTTCCCATGTATTTTTTCCTCAACTTT
CTGTCTTTTGTGGACATTTGCTACTCCTCAGTCACAGCACCCAAGATGATTATTGACCTGTTAGTGAAGA
AAAAGACTATATCCTATGTGGGGTGCATGTTACAACTCTTTGTGGTTCATTTCTTTGGTTGCACTGAGAT
CTTCATTCTTACTGTCATGGCCTATGATAGATATGTGGCCATTTGTAAACCTCTCCACTATATGACTATG
ATGGACCGGGAAAGATGCAATAAGATGTTGCTCGGAACATGGATCGGTGGCTTCTTACATTCTATTATCC
AAGTGGCTCTTGTGGTCCAGCTCCCCTTTTGTGGACCGAATGAGATTGATCACTATTTCTGTGATGTACA
TCCTGTACTGAAACTTGCCTGCACTGACACTTACATTGTTGGTATTTTTGTGACAGCAAACAGTGGCACC
ATTGCATTGGGAAGTTTTGTCATCTTGCTGATCTCATACACAGTCATTCTCATGTCTCTGAGAAAGCAGT
CATCTGAAGGCAGACGCAAAGCTCTCTCCACTTGTGGATCCCACATTGCTGTTGTCATCATTTTTTTTGG
CCCCTGTACTTTTATGTATATGCGGCCTGACACTACCTTCTCTGAGGACAAGATGGTAGCTATATTTTAC
ACCATTATCACTCCCATGCTGAATCCTCTAATTTACACTCTAAGAAATGCAGAAGTAAAGAATGCAATGA
GAAAACTGTGGGCTAGAAAGTTTTCCTGGGAAACTACTGGGAAATAG

Translation (318 aa):
MASRTYSMEEVNNVTEFIFLGLSQNPEVEKVCFVVFSFFYMVILLGNLLIMLTVCSGNLFKFPMYFFLNF
LSFVDICYSSVTAPKMIIDLLVKKKTISYVGCMLQLFVVHFFGCTEIFILTVMAYDRYVAICKPLHYMTM
MDRERCNKMLLGTWIGGFLHSIIQVALVVQLPFCGPNEIDHYFCDVHPVLKLACTDTYIVGIFVTANSGT
IALGSFVILLISYTVILMSLRKQSSEGRRKALSTCGSHIAVVIIFFGPCTFMYMRPDTTFSEDKMVAIFY
TIITPMLNPLIYTLRNAEVKNAMRKLWARKFSWETTGK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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