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Report for CCDS16321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16321.1 Public Mus musculus 2 Or5d35 23 108 98 CCDS HistoryNCBI Gene:258845Re-query CCDS DB by CCDS ID:16321.1Re-query CCDS DB by GeneID:258845See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054845.5 ENSMUSP00000060977.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054845.5Link to Ensembl Protein Viewer:ENSMUSP00000060977.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054845Re-query CCDS DB by Protein ID:ENSMUSP00000060977
Original member Current member EBI ENSMUST00000217006.1 ENSMUSP00000150220.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217006.1Link to Ensembl Protein Viewer:ENSMUSP00000150220.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217006Re-query CCDS DB by Protein ID:ENSMUSP00000150220
Original member Current member EBI ENSMUST00000214438.1 ENSMUSP00000150251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214438.1Link to Ensembl Protein Viewer:ENSMUSP00000150251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214438Re-query CCDS DB by Protein ID:ENSMUSP00000150251
Original member Current member NCBI NM_146848.2 NP_667059.2 Accepted alive Link to Nucleotide Sequence:NM_146848.2Link to Protein Sequence:NP_667059.2Re-query CCDS DB by Nucleotide ID:NM_146848Re-query CCDS DB by Protein ID:NP_667059Link to BLAST:NP_667059.2

Chromosomal Locations for CCDS 16321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88024724 88025689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGTTACTGACATATGGAAATAACAGTGGGGCCATGTTCATCCTATTGAGCTTCTCAGATTACCCAGAAA
TAGAGATGCCTCTCTTCTTGGTGTTTCTCGCCATCTACAGCATCACTGTGGTAGGAAATATTGGCATGAT
AGTCATAATAAGAATTAATCCCAAACTGCACACTCCCATGTACTTCTTCCTCAGCCACCTCTCCTTTGTG
GATTTCTGCTATTCCTCTGTCATTGCTCCCAAGATGCTGGTGAATCTTTTTATAAAAGACAGAGCCATCT
CATTTTTAGAATGTATAGTACAATATTTTTTCTTTGCTATCTTTGTGGTAACTGAAACCATTTTATTAGT
GGTTATGGCCTATGACAGATTTGTGGCCATCTGCAGACCACTGCTTTACACAGTAGCCATGTCTCAGAAA
CTCTGCATCAGTCTAGTGGTGGGATCATATGCATGGGGACTCATATGTTCCTTGACAATGACATGCTCTA
TTATCCAGTTATCTTTTGTTGGTATCAACACAATTGATCATTTCTTTTGTGAGTTCTCCTCACTTCTGGT
TCTTTCATGCTCTGATACTCATGTTAATCAAATACTTCTCTTCTCACTTTCTACTGTGAATGCTCTTAGT
ACTCTACTCATCATCCTTCTGTCATATATGTTTATCCTTGTCACCATACTCAAGATGCAATCATCCAGGG
GCCGCCAAAAGGCTTTCTATACGTGTGCTTCACACCTGACTACCATCACTATCTTCTATGGTACTATCCT
GTTTCTCTACTCTGTACCCAACTCAAAGAACTCCCAGCTCACATTCAAAGTGGCCTCTTTGTTTTATACC
CTGGTGATCCCCATGCTAAACCCTTTGATTTACAGTCTGAGGAATAAAGATGTGAAGGACACAATCAGAC
AAATCATGAAGATTAAATTTATAGCTCTCCCCCATTTATCCTCTAAAGTACGTTGA

Translation (321 aa):
MLLTYGNNSGAMFILLSFSDYPEIEMPLFLVFLAIYSITVVGNIGMIVIIRINPKLHTPMYFFLSHLSFV
DFCYSSVIAPKMLVNLFIKDRAISFLECIVQYFFFAIFVVTETILLVVMAYDRFVAICRPLLYTVAMSQK
LCISLVVGSYAWGLICSLTMTCSIIQLSFVGINTIDHFFCEFSSLLVLSCSDTHVNQILLFSLSTVNALS
TLLIILLSYMFILVTILKMQSSRGRQKAFYTCASHLTTITIFYGTILFLYSVPNSKNSQLTFKVASLFYT
LVIPMLNPLIYSLRNKDVKDTIRQIMKIKFIALPHLSSKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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