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Report for CCDS16295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16295.1 Public Mus musculus 2 Or5w10 23 108 98 CCDS HistoryNCBI Gene:258346Re-query CCDS DB by CCDS ID:16295.1Re-query CCDS DB by GeneID:258346See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102624.1 ENSMUSP00000099684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102624.1Link to Ensembl Protein Viewer:ENSMUSP00000099684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102624Re-query CCDS DB by Protein ID:ENSMUSP00000099684
Original member Current member NCBI NM_146349.2 NP_666461.2 Accepted alive Link to Nucleotide Sequence:NM_146349.2Link to Protein Sequence:NP_666461.2Re-query CCDS DB by Nucleotide ID:NM_146349Re-query CCDS DB by Protein ID:NP_666461Link to BLAST:NP_666461.2

Chromosomal Locations for CCDS 16295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87544607 87545542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGACATTTGAGATCATCACTGTTTTTACTGATTTTGTCTTGTTAGGACTTTCTGGCAGGCAGGATGTGC
AACAGGGCCTCTTTGCATTGTTCTTCCTTGTTTACGGCATAACTGTAATTGCTAATCTAGGGATGATCCT
GCTGATCAAGTTGGACAGCAGGCTTCACACACCTATGTACTATTTCATGAGCAATCTCTCCTTTTGTGAC
ATCTGCTATTCCACCATTATCTCTCCAAAGATGCTGGCTGATTTCTTGTTGAAAGAAAAGAGGATTCCTT
GCAATTTATGTGCTCTTCAGATGTACTTTTTAGGGGTCTTTGGAGATACAGAATGTCTCATCCTAGCTGT
CATGGCCTATGATTGTTATGTTGCCATCTGCAATCCCCTGCTCTATACAACTACAATGTCCACGAAGCTC
TACATCCAGCTTGTGGCTGTTGCCTATGCAGTAGGCTTGGTGGATTCAGCAGTCCACACATCCTGTACAT
TCCAACTGTCCTTCTGCAATTCAAATGTCATCAACCACTTTTCCTGTGACCTTCCACCCTTGCTGGCCCT
CTCCTGCTCAGATACATCCATCAATGAAATACTGCTCTTTATATTTAGTACACTCGTGATAGGGTGTAGC
ATTTTCCACATCCTTCTCTCCTACTGCTACATCATTGCGACCATCTGCAGGATGAACTCTGCTGAGGGCA
GGCGCAAAGCATTTTCCACCTGTACCTCCCATCTCATGGCTGTGGCCATTTTTCATGGAACTCTTTTCAT
GTATTTCCAACCCAGCTCACTTTACTCCATGGACACAGACAAAATGGCCTCTGTTTTCTACACAGTTGTG
ATTCCTATGTTAAATCCACTCATCTACAGTTTGAGAAATAAGGATGTGAAGGGGGCTCTGAAGAAGGTAA
TCAATATTAACTTGTGGCCTGGGTGA

Translation (311 aa):
MTFEIITVFTDFVLLGLSGRQDVQQGLFALFFLVYGITVIANLGMILLIKLDSRLHTPMYYFMSNLSFCD
ICYSTIISPKMLADFLLKEKRIPCNLCALQMYFLGVFGDTECLILAVMAYDCYVAICNPLLYTTTMSTKL
YIQLVAVAYAVGLVDSAVHTSCTFQLSFCNSNVINHFSCDLPPLLALSCSDTSINEILLFIFSTLVIGCS
IFHILLSYCYIIATICRMNSAEGRRKAFSTCTSHLMAVAIFHGTLFMYFQPSSLYSMDTDKMASVFYTVV
IPMLNPLIYSLRNKDVKGALKKVININLWPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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