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Report for CCDS16268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16268.1 Public Mus musculus 2 Or5t5 23 108 98 CCDS HistoryNCBI Gene:258363Re-query CCDS DB by CCDS ID:16268.1Re-query CCDS DB by GeneID:258363See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055273.1 ENSMUSP00000049733.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055273.1Link to Ensembl Protein Viewer:ENSMUSP00000049733.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000055273Re-query CCDS DB by Protein ID:ENSMUSP00000049733
Original member Current member EBI ENSMUST00000213354.1 ENSMUSP00000149944.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213354.1Link to Ensembl Protein Viewer:ENSMUSP00000149944.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213354Re-query CCDS DB by Protein ID:ENSMUSP00000149944
Original member Current member EBI ENSMUST00000219561.1 ENSMUSP00000151453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219561.1Link to Ensembl Protein Viewer:ENSMUSP00000151453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219561Re-query CCDS DB by Protein ID:ENSMUSP00000151453
Original member Current member NCBI NM_001368206.1 NP_001355135.1 Accepted alive Link to Nucleotide Sequence:NM_001368206.1Link to Protein Sequence:NP_001355135.1Re-query CCDS DB by Nucleotide ID:NM_001368206Re-query CCDS DB by Protein ID:NP_001355135Link to BLAST:NP_001355135.1
Original member Current member NCBI NM_146366.2 NP_666478.1 Accepted alive Link to Nucleotide Sequence:NM_146366.2Link to Protein Sequence:NP_666478.1Re-query CCDS DB by Nucleotide ID:NM_146366Re-query CCDS DB by Protein ID:NP_666478Link to BLAST:NP_666478.1

Chromosomal Locations for CCDS 16268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86785732 86786700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGAAAAGATCACATCAGCTGTGGATGTCCACAATATTCCATTAAAGAACATGACTGAAGCCACCATGT
TTATTCTCTTAGGATTCACAGATGACTTTGAACTCCAAGTCTTCCTGTTTTTACTGTTTCTTGCTATTTA
TCTCTTCACTCTGGTAGGAAACTTTGGACTGGTTGTTTTGGTCATTGGGGATTGTCGGCTACACAACCCC
ATGTACTATTTCCTAAGTGTTTTGTCTTTCCTGGATGCTTGCTATTCTACAGTTGTTACACCCAAAATGT
TGGTCAACTTTCTAAGTGAAAATAAGTCCATTTCATTCCTTGCATGTGCAACCCAAATGCTTCTCTTTGT
TTCGTTGGGAACCACAGAATGCTTTCTCCTGGCAGCAATGGCTTATGACCGATATGTAGCCATCTACAAC
CCACTTCTGTATACAGTGGCCATGTCACCCAGAGTATACCTGCCACTCATCATTGCTTCCTATGCTGGTG
GAGTTGTGCATGGTGCTATCCACACAGTGGCCACTTTCAGTCTGTCCTTCTGTGGATCCAATGAAATTAA
GCATGTCTTCTGTGACATCCCTGCATTGCTTGCTCTTTCTTGTTCTGATACCCACACAAATGAGCTTCTA
GTCTTGTACTTGGTGGGCTTGATTGAGATTGTTACCATCCTGATTGTTCTGGTCTCCTATGGATTCATCC
TCTTTGCCATTCTGAACATGCATTCTGCTGAGGGTAGGAGGAAAGTGTTCTCTACATGTGGCTCTCACCT
CACTGGAGTCTCTATTTACCATGGTACAATCCTTTTCACTTATATGAGGCCTAGTTCCAGTTATGCTTCA
AATCATGACATGGTAGTGTCAATATTTTACACCATTGTGATACCCATGTTGAATCCTATCATCTATAGTT
TGAGGAACAAAGATGTAAAAGTAGCATTTAATAAATTGTGGAGAAAATGTGATTCATAA

Translation (322 aa):
MEKITSAVDVHNIPLKNMTEATMFILLGFTDDFELQVFLFLLFLAIYLFTLVGNFGLVVLVIGDCRLHNP
MYYFLSVLSFLDACYSTVVTPKMLVNFLSENKSISFLACATQMLLFVSLGTTECFLLAAMAYDRYVAIYN
PLLYTVAMSPRVYLPLIIASYAGGVVHGAIHTVATFSLSFCGSNEIKHVFCDIPALLALSCSDTHTNELL
VLYLVGLIEIVTILIVLVSYGFILFAILNMHSAEGRRKVFSTCGSHLTGVSIYHGTILFTYMRPSSSYAS
NHDMVVSIFYTIVIPMLNPIIYSLRNKDVKVAFNKLWRKCDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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