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Report for CCDS16250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16250.1 Public Mus musculus 2 Or5j3 23 108 98 CCDS HistoryNCBI Gene:259012Re-query CCDS DB by CCDS ID:16250.1Re-query CCDS DB by GeneID:259012See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054746.4 ENSMUSP00000058454.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054746.4Link to Ensembl Protein Viewer:ENSMUSP00000058454.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000054746Re-query CCDS DB by Protein ID:ENSMUSP00000058454
Original member Current member EBI ENSMUST00000215090.1 ENSMUSP00000149051.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215090.1Link to Ensembl Protein Viewer:ENSMUSP00000149051.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215090Re-query CCDS DB by Protein ID:ENSMUSP00000149051
Original member Current member EBI ENSMUST00000217166.1 ENSMUSP00000149344.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217166.1Link to Ensembl Protein Viewer:ENSMUSP00000149344.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217166Re-query CCDS DB by Protein ID:ENSMUSP00000149344
Original member Current member NCBI NM_147010.2 NP_667221.2 Accepted alive Link to Nucleotide Sequence:NM_147010.2Link to Protein Sequence:NP_667221.2Re-query CCDS DB by Nucleotide ID:NM_147010Re-query CCDS DB by Protein ID:NP_667221Link to BLAST:NP_667221.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_667221.2 312 Q8VGR8 312 100% 0 0

Chromosomal Locations for CCDS 16250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86297818 86298756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCTACTGAGAACTGTACAGTTGTTACTGAGTTCATTCTTTTAGGACTGACTGATCGTGCTGAATTGA
AAATGATGCTCTTTGTTTTATTTCTGGTGATTTATGCTGTTACCTTGTTAGGGAATCTGGGCATGATTCT
GTTAATCCGCATTACTCCCAAACTCCACACACCAATGTACTTTTTCCTCAGTTGCCTATCATTTGTAGAT
GCCTGTTATTCATCAGTCATTGCACCAAAAATGTTGATTAGTTTCTTGGTAGTAACAGAAACCATCTCTT
TCTCTGCCTGCATCATGCAACATTTATTTTTCGGAGTGCTGGTTACCACCGAAGGCTTCTTGCTGTCAGT
GATGGCTTATGACCGTTATGTGGCAGTTGTTAACCCATTGCTGTATACTGTGTCCATGTCTAAGCAAAAG
TGTATCATGATGGTCACTGGGTCAGTCATAGGTGGAACTATTAACTCTTTGACACACACCATAAGTTTGA
GTAAGCTGTCTTTTTGTGGACCTAATATAGTGGGTCACTTCTTCTGTGACATACCATCGCTGCTGATACT
CTCATGTTCTGATACCTCCATGAATGAATTTCTGCTCTTGATCTTCTCTGGAGTTATCGCCATTGGTACT
CTCTTGATTGTGTTCATATCCTATTTACTCATTGCTCTGGCCATTTTGAGAATACGCTCAGCTTCTGGAC
GACAAAAAGCCTTCTCCACTTGTGCTTCTCACCTGACTGCTGTCACTATCTTCTATGGCACCTTAAGCTT
TAATTACATTCAGCCAAGCTCCCAGTATTCTGTAGAACAAGAGAAGGTGGTGTCGGTGTTCTATACACTG
GTGATTCCTATGTTAAATCCCATGATTTACAGTCTCAGGAACAAAGAGGTGAAAGAAGCTGCAAAGAGAG
CCATAGAGATGAAGTCCTTCTCATGTTAA

Translation (312 aa):
MATENCTVVTEFILLGLTDRAELKMMLFVLFLVIYAVTLLGNLGMILLIRITPKLHTPMYFFLSCLSFVD
ACYSSVIAPKMLISFLVVTETISFSACIMQHLFFGVLVTTEGFLLSVMAYDRYVAVVNPLLYTVSMSKQK
CIMMVTGSVIGGTINSLTHTISLSKLSFCGPNIVGHFFCDIPSLLILSCSDTSMNEFLLLIFSGVIAIGT
LLIVFISYLLIALAILRIRSASGRQKAFSTCASHLTAVTIFYGTLSFNYIQPSSQYSVEQEKVVSVFYTL
VIPMLNPMIYSLRNKEVKEAAKRAIEMKSFSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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