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Report for CCDS16248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16248.1 Public Mus musculus 2 Or8k18 23 108 98 CCDS HistoryNCBI Gene:259018Re-query CCDS DB by CCDS ID:16248.1Re-query CCDS DB by GeneID:259018See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099899.2 ENSMUSP00000097483.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099899.2Link to Ensembl Protein Viewer:ENSMUSP00000097483.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099899Re-query CCDS DB by Protein ID:ENSMUSP00000097483
Original member Current member EBI ENSMUST00000216185.2 ENSMUSP00000149360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216185.2Link to Ensembl Protein Viewer:ENSMUSP00000149360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216185Re-query CCDS DB by Protein ID:ENSMUSP00000149360
Original member Current member NCBI NM_147016.2 NP_667227.2 Accepted alive Link to Nucleotide Sequence:NM_147016.2Link to Protein Sequence:NP_667227.2Re-query CCDS DB by Nucleotide ID:NM_147016Re-query CCDS DB by Protein ID:NP_667227Link to BLAST:NP_667227.2

Chromosomal Locations for CCDS 16248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86254765 86255691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGGGCAACCAAATATAACAATGCCAACTGAGTTCATCCTGATGGGAGTCACACAGACTGCTGAGCTGA
AACTCCCACTGTTTGCAGTCTTCCTCACTATCTATGCAATCACCGTGGTGGGAAACCTCGGCATGATCAT
TTTGACCAAACTGGACTCTCGCCTACAAACCCCTATGTACTTTTTCATCAGACACCTTGCTTTCATTGAT
CTTGGAAATTCCACTGCCATCTGCCCCAAGATGCTGGTGAATTTTGTTGTGGATAAAAACAACATCACCT
ATTATGCTTGTGCCACACAAATGGCATGCTTCATTCTGTTCATTGTCAGTGAACTTTCAATCTTGTCCTC
CATGGCCTATGACCGCTATGTGGCTATCTGCAACCCTCTGCTCTATAGTGCTATAATGTCTCAGAGACGC
TGTCAAGTGCTTATTGGAATTCCATATCTCTACAGTATCTTCCAGGCTCTGCTGTTCCCTATTAGGTATT
TCACATTAAGCTTCTGTGGTGCTAATATCATAAGCCATTTCTATTGTGATGTTGTCCCCTTACTACCTTT
GATCTGTTCACATGTAGAAGAGACAGAATTATTGACTATATTGTTTTCAGCCTTCAATTTAATCTCTTCT
CTTGTTGTTGTTCTTTTGTCTTACATGCTAATTTTGTTAACCATATTTCAAATGCGTTCTGCAGAAGGTA
GGAAAAAAGCTTTCTCCACTTGTGGTTCCCATCTGACAGTGGTGGTTGTGTTCTACGGTTCTCTACTCTT
CATGTATGTTCAGCCTAAATCTGCTCACTCATTTGAATATGACAAAGCAGCATCTGTGTTTTATACTTTA
GTGATCCCCATGCTTAACCCCTTGATTTATAGTTTAAGGAACAAAGAGGTAAAAAATGCCTTTCATAGAG
TATTTAAGAATCTATGA

Translation (308 aa):
MGQPNITMPTEFILMGVTQTAELKLPLFAVFLTIYAITVVGNLGMIILTKLDSRLQTPMYFFIRHLAFID
LGNSTAICPKMLVNFVVDKNNITYYACATQMACFILFIVSELSILSSMAYDRYVAICNPLLYSAIMSQRR
CQVLIGIPYLYSIFQALLFPIRYFTLSFCGANIISHFYCDVVPLLPLICSHVEETELLTILFSAFNLISS
LVVVLLSYMLILLTIFQMRSAEGRKKAFSTCGSHLTVVVVFYGSLLFMYVQPKSAHSFEYDKAASVFYTL
VIPMLNPLIYSLRNKEVKNAFHRVFKNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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