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Report for CCDS16208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16208.1 Public Mus musculus 2 Or5ak25 23 108 98 CCDS HistoryNCBI Gene:258426Re-query CCDS DB by CCDS ID:16208.1Re-query CCDS DB by GeneID:258426See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099924.2 ENSMUSP00000097508.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099924.2Link to Ensembl Protein Viewer:ENSMUSP00000097508.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099924Re-query CCDS DB by Protein ID:ENSMUSP00000097508
Original member Current member EBI ENSMUST00000216933.1 ENSMUSP00000149952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216933.1Link to Ensembl Protein Viewer:ENSMUSP00000149952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216933Re-query CCDS DB by Protein ID:ENSMUSP00000149952
Original member Current member NCBI NM_146434.1 NP_666645.1 Accepted alive Link to Nucleotide Sequence:NM_146434.1Link to Protein Sequence:NP_666645.1Re-query CCDS DB by Nucleotide ID:NM_146434Re-query CCDS DB by Protein ID:NP_666645Link to BLAST:NP_666645.1

Chromosomal Locations for CCDS 16208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85438209 85439156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGATACAAAGAAATACCACTGAAGTCACTGACTTCTATCTTCTGGGATTTGGAGTCCAGAAAAATACTC
AGAGTATCCTCTTCGTTGTATTTCTTGTGGTCTATGTAACATCCATGGTGGGCAACACTGGGATGATCCT
CCTCATTAACACTAACTCCAGACTTCAGACTCCTATGTACTTCTTCTTACAAAACCTGGCTTTTGTTGAT
ATCTGTTACACATCTGCCATCACTCCCAAGATGCTACAGAACTTCATGGTAGAAGACAGTTCCATATCAT
ATACAGGATGTGTAATACAATTGTTGGTCTATGCCACATTTGCGACCAGTGACTGTTACCTCCTCGCTGT
TATGGCAGTGGACCGGTATGTGGCAATCTGTAAGCCCCTTCGCTACCCCATAATCATGTCTCGACAAGTT
TGTGTTCAGTTGGTAGCTTTTTCTTATCTCATGGGATCAATAAATTCCTCTGTACACACAGGATTTACAT
TCTCATTGTCTTATTGTAATTCCAAAAATATCAATCACTTTTTCTGTGATGTTGTCCCAATCATCAGCCT
TTCATGCTCCAACATTGATATTAATATCATGCTTCTTGTTATTTTTGTTGGATTTAACCTGACGTTCACT
GTGTTGGTCATTATCTTCTCCTACATATACATCATGGCCGCCATCCTAAAGATGTCCTCTACTGCAGGGA
GGAAGAAAACCTTCTCCACGTGTGCCTCCCACCTGACAGCAGTCACCATCTTCTATGGAACCCTTGCTTA
CATGTACTTACAGCCTCATTCGGACAATTCCGAGGAGAATATGAAAGTGGCCTCTGTGTTTTATGGCATT
GTGATTCCCATGCTGAATCCTCTGATCTACAGCCTGAGAAACAAGGAGGTCAAAGAAGGTTTTAAAGCAA
TGAGCAGAAGGTTCTTAAGATTGAAATCAAATCCTTGA

Translation (315 aa):
MIQRNTTEVTDFYLLGFGVQKNTQSILFVVFLVVYVTSMVGNTGMILLINTNSRLQTPMYFFLQNLAFVD
ICYTSAITPKMLQNFMVEDSSISYTGCVIQLLVYATFATSDCYLLAVMAVDRYVAICKPLRYPIIMSRQV
CVQLVAFSYLMGSINSSVHTGFTFSLSYCNSKNINHFFCDVVPIISLSCSNIDINIMLLVIFVGFNLTFT
VLVIIFSYIYIMAAILKMSSTAGRKKTFSTCASHLTAVTIFYGTLAYMYLQPHSDNSEENMKVASVFYGI
VIPMLNPLIYSLRNKEVKEGFKAMSRRFLRLKSNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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