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Report for CCDS16205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16205.1 Public Mus musculus 2 Or5ak22 23 108 98 CCDS HistoryNCBI Gene:258865Re-query CCDS DB by CCDS ID:16205.1Re-query CCDS DB by GeneID:258865See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16205.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099927.1 ENSMUSP00000097511.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099927.1Link to Ensembl Protein Viewer:ENSMUSP00000097511.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099927Re-query CCDS DB by Protein ID:ENSMUSP00000097511
Original member Current member EBI ENSMUST00000214895.2 ENSMUSP00000149333.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214895.2Link to Ensembl Protein Viewer:ENSMUSP00000149333.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214895Re-query CCDS DB by Protein ID:ENSMUSP00000149333
Original member Current member EBI ENSMUST00000213749.1 ENSMUSP00000150680.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213749.1Link to Ensembl Protein Viewer:ENSMUSP00000150680.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213749Re-query CCDS DB by Protein ID:ENSMUSP00000150680
Original member Current member NCBI NM_146865.1 NP_667076.1 Accepted alive Link to Nucleotide Sequence:NM_146865.1Link to Protein Sequence:NP_667076.1Re-query CCDS DB by Nucleotide ID:NM_146865Re-query CCDS DB by Protein ID:NP_667076Link to BLAST:NP_667076.1

Chromosomal Locations for CCDS 16205.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85399602 85400531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAAACACAGTAATGACTCCAAAGTGACTGAATTTATTCTCCTGGGATTCGCTGGTCAAAATGAGTCTT
GGCACATCCTCTTTGTGGTATTCCTAGTCATTTACATAGCCACTTTAGTGGGCAACATTGGCATGATCCT
GCTCATCAAGCTTCATTCTTCACTGCACACTCCCATGTACTTTTTCCTGCAGCATTTGGCTTTTGTTGAC
CTCTGTTACTCCTCTGCCATCACTCCCAGGACACTGCAAAATTTTGTGAGCACAAAACCATCCATCTCCT
TCACAGGATGCTTGGCTCAATTACTGGTCTATGGTATCTTTGTAACCAGTGACTGCTTCATCCTGGCTGC
TATGGCTGTCGACCGTTATGTGGCCATCTGTAACCCACTGCGCTATCCTATTATCATGTCCCAGAGACTC
TGCATTTTGCTGCTGCTTGGTTCATACACTATGGGATTCCTAAATGCCACTGTAAATACAGGTTTTACTT
TCTTATCTAACTTCTGCAAATCCAATGTCATTAATCATTTTTTCTGTGATGTACCACCAATTCTAGCCCT
CTCTTGTTCCAGTATTGACCTCAATATCATGGTACTGACAATTTTTGTTGGTTTTAACTTGACATTCACT
GTATCTGTTGTCATTCTTTCTTACACATTTATCTTGGCTGCCATCCTAAGGATGTCTTCAGCTTCAGGAA
GGAGAAAAGCTTTCTCCACGTGTGCATCCCATATGACCGCTGTCACCATATTCTATGGAACACTCTCATA
CATGTATGTACTTCATGGGACTAACAGATCTCAAGAACAGGAGAAGGTGGCTTCTGTGTTCTATGGTATT
ATGATTCCCATGTTAAACCCCCTCATCTACAGCCTAAGAAACCAGGATGTGATAGAAGCCCTGAGGCACA
TAGGAAACAAATGTTTCTAG

Translation (309 aa):
MKHSNDSKVTEFILLGFAGQNESWHILFVVFLVIYIATLVGNIGMILLIKLHSSLHTPMYFFLQHLAFVD
LCYSSAITPRTLQNFVSTKPSISFTGCLAQLLVYGIFVTSDCFILAAMAVDRYVAICNPLRYPIIMSQRL
CILLLLGSYTMGFLNATVNTGFTFLSNFCKSNVINHFFCDVPPILALSCSSIDLNIMVLTIFVGFNLTFT
VSVVILSYTFILAAILRMSSASGRRKAFSTCASHMTAVTIFYGTLSYMYVLHGTNRSQEQEKVASVFYGI
MIPMLNPLIYSLRNQDVIEALRHIGNKCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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