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Report for CCDS16182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16182.1 Public Mus musculus 2 Fam171b 23 108 98 CCDS HistoryNCBI Gene:241520Re-query CCDS DB by CCDS ID:16182.1Re-query CCDS DB by GeneID:241520See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051454.3 ENSMUSP00000062702.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051454.3Link to Ensembl Protein Viewer:ENSMUSP00000062702.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000051454Re-query CCDS DB by Protein ID:ENSMUSP00000062702
Original member Current member NCBI NM_175514.3 NP_780723.1 Accepted alive Link to Nucleotide Sequence:NM_175514.3Link to Protein Sequence:NP_780723.1Re-query CCDS DB by Nucleotide ID:NM_175514Re-query CCDS DB by Protein ID:NP_780723Link to BLAST:NP_780723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780723.1 821 Q14CH0-2 821 100% 0 0

Chromosomal Locations for CCDS 16182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 83812749 83812977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83853370 83853603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83855437 83855529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83858218 83858373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83860407 83860577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83876671 83876787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83878156 83878279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83879110 83880451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2466 nt):
ATGGCGAGGCTCTGCCGTCGCGTCCCCTGCGCCCTGCTCCTCGGCCTGGCCGCTGTGCTGCTGAAGGCGC
GGCTGGTCCCCGCGGCCGCTAGAGCCGAACTCAGTCGCTCCGACCTCAGCCTCATCCAGCAGCAGCAGCA
GCAGCAGCTGCAAGAGCAAAAGCAGCGGGAGGAGGCAGAGGAGGGGAGGCCGGAGGTGCCTGGGGCATCC
TCTACTTTGGTGGCTCCAGTGTCCGTATTTATGCTGAAAGTCCAGGTCAATGACATCGTCAGTCGCCAGT
ACCTGAGCCAAGCCGTTGTGGAGGTGTTTGTTAACTACTCGAAGACGAATTCTACAGTCACCAGAAGCAA
TGGAGCAGTATTGATAAAAGTACCCTATCAGTTAGGACTCAGCTTAACCATCGTTGCTTACAAAGATGGC
TACGTCTTGACATCTCTGCCGTGGAAAACTGGAAGGATGCCAATATATTCTTCAGTTACACTTTCACTGT
TCCCGCAAAGCCAAGCAAATATATGGCTCTTTGAAGACACCGTTTTGATTACAGGAAAATTAGCTGATGC
CAAATCTCAACCAAGTGTTCAGTTTTCAAAAGCCTTCATTAAACTTCCTGACAACCATCACATCAGCAAC
GTGACTGGCTATCTAACAGTTCTACACCAGTTTTTAAAGGTGGACAGTTTTCTGCCTGCGACTGGAGTCA
CTTATAAATCAGGTTTGGAAAATGTTGAGTTGACTCCTCATGCTGCAATATGTGTGAAAATATATTCTGG
AGGGAAAGAATTAAAGGTGGATGGCTCTATCCATGTTTCTCTTCCCCTTCTACATACAAGTAATATAAAA
ATAGGAGATCGGATACCTGCTTGGACATTTGATATGAATGCAGGTGTTTGGGTGCATCACGGTTGGGGAA
CAGTCAAGGAGCATAACAGTCATTTGATTTGGACCTATGATGCACCACATTTGGGCTACTGGATAGCAGC
TCCATCCCCAGCCACTCTAGATTTCGGCATAAATGACGATTTCCAAGACATCACTGCCTACCACACAGTG
TTCCTTACAGCCATATTAGGGGGGACGATCGTCATCATCATTGGGTTTTTTGCTATACTGCTTTGTTATT
GCAGGGGAAAATGTGCAACACCACAGAAAAGAGAAAGAAATATCACGAAGCTTGAGATCCTCAAGAGAGA
TCAGACAACCTCGACAACACATATAAATCATATCAGTTCAGTCAAGACTGCATTAAAAGCTGAAGATAAA
CCACAGTTGTTCAATGCCAAAACTTCCTCCTACAGTCCCCAGAGAAAGGAAACCACAAAAACGGAGGCAG
AAGAAAGAATTTCCATGGTGAAAACTCGGGACAACTTTAAAATCTACAATGAAGACGTTTCCTTTCTGTC
AGTCAATCACAATTATTCAAGAAACCCAACACAGTCTTTGGAGCCCAGTATGGGGAGCAAACAGCCTAAG
CATATTAACAACAATCTCTCCCCGTCGCTAGGTGACGCTCAAGAGGAAAAGAGATACCTTACAGGGACCG
AAGAGGTCTATGGGCGGTCCCACATTCCCGAGCAGCTCATGCACATCTACAGCCAGCCTATTGCCATCCT
TCAGACATCAGACCTTTTCTCCATGCCAGAGCAGTTACATGCCGCTAAGTCTGCCACTTTACCAAGAAAG
GGACAATTGGTCTATGGCCAATTGATGGAACCAGTGAACAGAGAGAACTTTACACAAACATTGCCCAAAA
TGCCGATGCATTCTCACGTCCAGGCCCCAGATGCCAGAGAAGAAGACATTGTACTTGAAGGTCAGCAGAG
CTTGCCATCCCAGACCTCAGATTGGAGCCGATATTCCAACAGCTTGTTGGAGTCTGTGTCTGTTCCTGGA
ACTCTAAATGAAGCTGTGGTGATGACCCCCTTTTCATCGGAACTTCAAGGAATTTCAGAGCAGACCCTCC
TGGAGCTGTCCAAAGGCAAGCCTCCGCATCCCAGGGCTTGGTTTGTGTCTCTTGATGGAAAGCCTGTGGC
CCAAGTGAGACACTCCTTTATAGACCTGAAAAAAGGCAAGAGAACCCAGAGCAATGATACGAGTCTAGAC
TCTGGGGTGGATATGAACGAGCATCAGTCAAGCAGAAAGCTGGAGAGGGAGAAAACGTTCATCAAGAGCA
TGCATCAGCCCAAGATCCTTTACCTGGAAGACTTAGACCTGAGCAGCAGCGAGAGTGGAACCACCGTCTG
CTCCCCCGAGGATCCCGCATTGAGGCACATCTTAGAAGGGGGAAGCGGGGTTATTATCGAGCACCCCGGG
GAAGAGTCTCCAGGAAGGAAAAGCACTGTGGAAGATTTTGAAGCCAACACATCCCCCACTAAAAAACGAG
GCCGGCCACCGCCACTAGCCAAAAGAGATAGCAAGACTAACATCTGGAAGAAGCGAGAGGAACGCCCACT
GATTCCCCTAAACTAA

Translation (821 aa):
MARLCRRVPCALLLGLAAVLLKARLVPAAARAELSRSDLSLIQQQQQQQLQEQKQREEAEEGRPEVPGAS
STLVAPVSVFMLKVQVNDIVSRQYLSQAVVEVFVNYSKTNSTVTRSNGAVLIKVPYQLGLSLTIVAYKDG
YVLTSLPWKTGRMPIYSSVTLSLFPQSQANIWLFEDTVLITGKLADAKSQPSVQFSKAFIKLPDNHHISN
VTGYLTVLHQFLKVDSFLPATGVTYKSGLENVELTPHAAICVKIYSGGKELKVDGSIHVSLPLLHTSNIK
IGDRIPAWTFDMNAGVWVHHGWGTVKEHNSHLIWTYDAPHLGYWIAAPSPATLDFGINDDFQDITAYHTV
FLTAILGGTIVIIIGFFAILLCYCRGKCATPQKRERNITKLEILKRDQTTSTTHINHISSVKTALKAEDK
PQLFNAKTSSYSPQRKETTKTEAEERISMVKTRDNFKIYNEDVSFLSVNHNYSRNPTQSLEPSMGSKQPK
HINNNLSPSLGDAQEEKRYLTGTEEVYGRSHIPEQLMHIYSQPIAILQTSDLFSMPEQLHAAKSATLPRK
GQLVYGQLMEPVNRENFTQTLPKMPMHSHVQAPDAREEDIVLEGQQSLPSQTSDWSRYSNSLLESVSVPG
TLNEAVVMTPFSSELQGISEQTLLELSKGKPPHPRAWFVSLDGKPVAQVRHSFIDLKKGKRTQSNDTSLD
SGVDMNEHQSSRKLEREKTFIKSMHQPKILYLEDLDLSSSESGTTVCSPEDPALRHILEGGSGVIIEHPG
EESPGRKSTVEDFEANTSPTKKRGRPPPLAKRDSKTNIWKKREERPLIPLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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