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Report for CCDS16179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16179.1 Public Mus musculus 2 Nup35 23 108 98 CCDS HistoryNCBI Gene:69482Re-query CCDS DB by CCDS ID:16179.1Re-query CCDS DB by GeneID:69482See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028382.12 ENSMUSP00000028382.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028382.12Link to Ensembl Protein Viewer:ENSMUSP00000028382.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028382Re-query CCDS DB by Protein ID:ENSMUSP00000028382
Original member Current member NCBI NM_027091.4 NP_081367.1 Accepted alive Link to Nucleotide Sequence:NM_027091.4Link to Protein Sequence:NP_081367.1Re-query CCDS DB by Nucleotide ID:NM_027091Re-query CCDS DB by Protein ID:NP_081367Link to BLAST:NP_081367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081367.1 325 Q8R4R6 325 100% 0 0

Chromosomal Locations for CCDS 16179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 80638893 80638932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80642625 80642795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80644152 80644279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80646409 80646463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80652854 80652995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80654793 80654862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80655949 80656077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80657189 80657353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80658321 80658398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCAGCGTTTGCGGTGGATCCCCAGGCGCCCACGTTGGGATCTGAACCAATGATGTTGGGTTCACCTA
CATCTCCAAAGACAGGCGCTAATGCCCAGTTCTTGCCTGGATTTTTAATGGGGGATCTACCAGCTCCAGT
GACTCCGCAACCTCGATCAATTAGTGGCCCTTCAGTAGGAGTAATGGAAATGAGATCACCTTTACTAGCA
GGGGGCTCCCCACCACAGCCAGTTGTCCCTGCTCATAAAGATAAGAGTGGAGCTCCACCTGTGAGAAGTA
TCTATGATGACATTTCCAGCCCAGGACTTGGATCAACGCCTTTGACTTCAAGAAGACAGGCAAACATTTC
ATTGTTGCAGAGTCCTCTTGTTGGAGCTACAACTCCTGTACCTGGGCAAAGCATGTTTAGTCCAGCAAAC
ATTGGTCAACCACGAAAGACAACACTATCTCCTGCCCAACTGGATCCTTTTTATACTCAAGGAGATTCTC
TGACTTCAGAAGATCACCTAGATGACACTTGGGTGACTGTGTTTGGGTTTCCACAGGCATCTGCTTCTTA
TATATTATTACAGTTTGCACAATATGGGAATATCTTAAAGCATGTGATGTCTAACACAGGCAACTGGATG
CATATTCGTTACCAATCTAAATTGCAAGCCCGGAAAGCCTTAAGCAAAGACGGGAGAATATTTGGAGAAT
CCATCATGATTGGTGTCAAGCCATGTATAGATAAAAATGTCATGGAAAACAGTGACAGAGGAGTCTTGTC
ATCTCCATCTCTAGCCTTTACAACACCCATCAGGACTTTAGGCACTCCAACACAGTCCGGAAGCACTCCT
AGGGTTTCTACCATGAGGCCTCTTGCCACAGCATACAAGGCCTCCACTAGTGACTACCAGGTTATTTCTG
ACAGACAGACACCAAAGAAGGATGAGAGCCTTGTGTCAAGAGCGATGGAGTACATGTTCGGTTGGTAG

Translation (325 aa):
MAAFAVDPQAPTLGSEPMMLGSPTSPKTGANAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLA
GGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQANISLLQSPLVGATTPVPGQSMFSPAN
IGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDTWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWM
HIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNVMENSDRGVLSSPSLAFTTPIRTLGTPTQSGSTP
RVSTMRPLATAYKASTSDYQVISDRQTPKKDESLVSRAMEYMFGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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