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Report for CCDS16066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16066.1 Public Mus musculus 2 Gcg 23 108 98 CCDS HistoryNCBI Gene:14526Re-query CCDS DB by CCDS ID:16066.1Re-query CCDS DB by GeneID:14526See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102733.9 ENSMUSP00000099794.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102733.9Link to Ensembl Protein Viewer:ENSMUSP00000099794.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102733Re-query CCDS DB by Protein ID:ENSMUSP00000099794
Original member Current member NCBI NM_008100.4 NP_032126.1 Accepted alive Link to Nucleotide Sequence:NM_008100.4Link to Protein Sequence:NP_032126.1Re-query CCDS DB by Nucleotide ID:NM_008100Re-query CCDS DB by Protein ID:NP_032126Link to BLAST:NP_032126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032126.1 180 P55095 180 100% 0 0

Chromosomal Locations for CCDS 16066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 62474978 62474984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62475716 62475859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62476824 62476961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62478555 62478716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62480465 62480556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAAGACCATTTACTTTGTGGCTGGATTGCTTATAATGCTGGTGCAAGGCAGCTGGCAGCACGCCCTTC
AAGACACAGAGGAGAACCCCAGATCATTCCCAGCTTCCCAGACAGAAGCGCATGAGGACCCTGATGAGAT
GAATGAAGACAAACGCCACTCACAGGGCACATTCACCAGCGACTACAGCAAATACCTGGACTCCCGCCGT
GCCCAAGATTTTGTGCAGTGGTTGATGAACACCAAGAGGAACCGGAACAACATTGCCAAACGTCATGATG
AATTTGAGAGGCATGCTGAAGGGACCTTTACCAGTGATGTGAGTTCTTACTTGGAGGGCCAGGCAGCAAA
GGAATTCATTGCTTGGCTGGTGAAAGGCCGAGGAAGGCGAGACTTCCCAGAAGAAGTCGCCATTGCCGAG
GAACTCGGCCGCAGGCACGCTGATGGCTCCTTCTCTGACGAGATGAGCACCATTCTGGATAATCTTGCCA
CCAGGGACTTCATCAACTGGCTGATTCAAACCAAGATCACTGACAAGAAATAG

Translation (180 aa):
MKTIYFVAGLLIMLVQGSWQHALQDTEENPRSFPASQTEAHEDPDEMNEDKRHSQGTFTSDYSKYLDSRR
AQDFVQWLMNTKRNRNNIAKRHDEFERHAEGTFTSDVSSYLEGQAAKEFIAWLVKGRGRRDFPEEVAIAE
ELGRRHADGSFSDEMSTILDNLATRDFINWLIQTKITDKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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