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Report for CCDS16047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16047.1 Public Mus musculus 2 Ermn 23 108 98 CCDS HistoryNCBI Gene:77767Re-query CCDS DB by CCDS ID:16047.1Re-query CCDS DB by GeneID:77767See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090940.5 ENSMUSP00000088458.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090940.5Link to Ensembl Protein Viewer:ENSMUSP00000088458.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090940Re-query CCDS DB by Protein ID:ENSMUSP00000088458
Original member Current member NCBI NM_029972.4 NP_084248.2 Accepted alive Link to Nucleotide Sequence:NM_029972.4Link to Protein Sequence:NP_084248.2Re-query CCDS DB by Nucleotide ID:NM_029972Re-query CCDS DB by Protein ID:NP_084248Link to BLAST:NP_084248.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084248.2 281 Q5EBJ4 281 100% 0 0

Chromosomal Locations for CCDS 16047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 58047754 58048265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58051751 58051843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58052476 58052716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGACAGATACTCCTGAGACACTGAGCGGGACAGAGTGCAATGGGGACAGACCACCTGAGAATGGCCAAC
AGCCTAGCAGTCAAACCAGGCAGGAGACAACTGATGCAGATGAGACCCAGGCATACTACAAGGTTGAACC
CAGTCTTGAAGATTTACCTGCAAAAGAAAATCAAGAAGAAACTGGAAACACTAAAGGGAACATACTTCCT
AAAGGGCCTGAAGATGAGAAGATCCTCAATGAAAACCCAGAAGAGAACCTCTTCGTTGTTCACCAGGCCA
TCAAAGATCTTTCTCTCCAAGAAATAAGTGCAGAAGACATGGCTTTCCGAGAAGGGCATCCGTGGAAGAA
GATTCCTCCGAACAGCAGTAACCTGGAAGTGAGTAGACAGAAGGAAAGAACTGCCCAGCAACAGCTTGAG
CAGAGAGGAGATGCGAGTACAACTGAAATCGAATGGCTGGGGTTCCAGAAATCTCGTCCAGTTGACATCT
TGCATTCTAAGTGTGACGAGGAAGAAGAAGAAGAAGAAGAAGTTTGGAATGAAGAGATAAATGAGGAAGA
TGTTGATGAGTGTGCTGAAGAGGAAGATGAAGTTCGAGTAATAGAATTTAAGAGAAAACACAGAGAAGGT
TCTCCATTAAAAGAGGAAAGCCTTGCAAGGGAGGACTCCCCACTAGGCAGCCCTGGCTCCCAACCTGGGA
CCCCAGATGAGCAGCCAGTGTTCGGAAAGAAGGGAGATATCGCCAGGAATTCTTATTCCAGATACAACAC
GATATCCTATCGGAAAATAAGGAAAGGCAACACCAAACAGAGAATTGATGAGTTTGAGTCAATGATGCAC
TTATAA

Translation (281 aa):
MTDTPETLSGTECNGDRPPENGQQPSSQTRQETTDADETQAYYKVEPSLEDLPAKENQEETGNTKGNILP
KGPEDEKILNENPEENLFVVHQAIKDLSLQEISAEDMAFREGHPWKKIPPNSSNLEVSRQKERTAQQQLE
QRGDASTTEIEWLGFQKSRPVDILHSKCDEEEEEEEEVWNEEINEEDVDECAEEEDEVRVIEFKRKHREG
SPLKEESLAREDSPLGSPGSQPGTPDEQPVFGKKGDIARNSYSRYNTISYRKIRKGNTKQRIDEFESMMH
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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