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Report for CCDS16024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16024.1 Public Mus musculus 2 Kif5c 23 108 98 CCDS HistoryNCBI Gene:16574Re-query CCDS DB by CCDS ID:16024.1Re-query CCDS DB by GeneID:16574See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028102.13 ENSMUSP00000028102.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028102.13Link to Ensembl Protein Viewer:ENSMUSP00000028102.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028102Re-query CCDS DB by Protein ID:ENSMUSP00000028102
Original member Current member NCBI NM_008449.3 NP_032475.2 Accepted alive Link to Nucleotide Sequence:NM_008449.3Link to Protein Sequence:NP_032475.2Re-query CCDS DB by Nucleotide ID:NM_008449Re-query CCDS DB by Protein ID:NP_032475Link to BLAST:NP_032475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032475.2 956 P28738 956 100% 0 0

Chromosomal Locations for CCDS 16024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 49619662 49619787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49671752 49671842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49680165 49680238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49688653 49688757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49693694 49693742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49694000 49694055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49694768 49694855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49697980 49698104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49700501 49700605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49700957 49701105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49710720 49710868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49722977 49723149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49727891 49727959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49730117 49730323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49732704 49732850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49735433 49735621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49739083 49739200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49741333 49741409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49741939 49742048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49744365 49744466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49744686 49744746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49749299 49749370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49752249 49752353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49757339 49757555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49758810 49758916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGGCGGATCCAGCCGAATGCAGCATCAAAGTGATGTGCCGGTTCCGGCCCCTCAACGAAGCGGAGATCC
TCCGCGGGGACAAATTCATCCCCAAATTCAAAGGCGAGGAGACGGTGGTGATCGGGCAAGGGAAGCCGTA
TGTCTTTGACCGAGTGCTGCCGCCCAACACAACCCAGGAGCAGGTCTACAATGCCTGTGCAAAGCAGATT
GTCAAAGATGTCCTTGAGGGTTATAATGGAACAATTTTTGCATATGGGCAGACTTCATCAGGAAAAACTC
ATACCATGGAGGGGAAGTTACATGATCCTCAGCTTATGGGTATCATTCCAAGGATTGCACATGATATTTT
TGATCACATCTATTCCATGGACGAGAACCTGGAGTTTCATATCAAGGTTTCCTATTTTGAGATCTACTTG
GACAAAATAAGGGACTTGCTTGATGTGTCCAAGACCAACTTGGCAGTTCATGAAGACAAAAACAGAGTCC
CCTATGTAAAGGGGTGCACCGAGAGGTTTGTGTCAAGCCCGGAGGAGGTCATGGATGTGATCGATGAGGG
CAAAGCAAACCGACACGTGGCTGTGACAAACATGAACGAACACAGCTCTAGGAGTCACAGTATCTTCCTG
ATTAACATTAAGCAAGAGAATGTGGAGACTGAAAAAAAACTCAGCGGGAAGCTGTATTTGGTTGATTTGG
CTGGGAGTGAAAAGGTCAGCAAAACCGGTGCCGAGGGAGCTGTTCTTGATGAAGCTAAAAATATCAACAA
GTCTTTGTCTGCTCTTGGAAATGTGATTTCTGCCTTGGCAGAAGGGACAAAAACACATGTACCGTACCGG
GACAGCAAGATGACTCGGATTCTCCAGGACTCTCTGGGTGGGAACTGTAGGACCACCATTGTCATTTGCT
GTTCTCCTTCAGTCTTCAATGAAGCCGAGACCAAGTCCACGCTGATGTTTGGACAGAGAGCAAAGACCAT
CAAGAATACAGTCTCTGTGAACTTGGAACTAACAGCAGAAGAGTGGAAGAAGAAATATGAAAAAGAGAAA
GAGAAGAACAAGGCCTTGAAGAGTGTCCTCCAGCATCTGGAGATGGAGCTGAACAGGTGGAGGAACGGGG
AAGCTGTACCCGAGGACGAACAGATCAGCGCCAAGGACCAGAAGAGCCTAGAGCCCTGTGACAACACACC
CATCATAGACAACATCACGCCTGTTGTGGACGGCATCTCTGCCGAGAAGGAGAAGTATGACGAGGAGATC
ACCAGTTTGTACCGACAGCTCGATGATAAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGC
TGAAGCAACAGATGTTGGATCAGGATGAGCTCCTGGCTTCCACGAGAAGGGACTATGAGAAGATCCAGGA
GGAGCTGACACGCCTCCAGATCGAAAATGAGGCAGCTAAAGACGAAGTGAAAGAAGTCCTCCAGGCCCTG
GAGGAGCTGGCTGTCAATTACGACCAGAAGTCACAAGAAGTGGAGGACAAGACCAGGGCCAACGAGCAAC
TGACTGATGAGCTGGCCCAGAAAACGACGACACTGACAACCACCCAGCGAGAGCTGAGTCAGCTGCAAGA
GCTTAGTAACCACCAGAAAAAGAGGGCCACAGAGATCCTGAACCTGCTTCTCAAGGACCTGGGGGAGATA
GGCGGAATTATTGGCACCAACGATGTGAAGACTCTGGCAGATGTGAACGGGGTCATTGAGGAGGAGTTCA
CCATGGCACGCCTGTACATTAGCAAGATGAAGTCGGAGGTCAAGTCTCTCGTGAACCGCAGCAAGCAGCT
GGAGAGTGCCCAGATGGACTCTAACAGGAAGATGAACGCCAGTGAGCGCGAGCTGGCAGCGTGCCAGTTG
CTTATCTCACAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGC
GGCAGCTGGAAGAGTCCCAGGACTCCCTCAGCGAGGAACTGGCCAAGCTCCGGGCCCAGGAAAAAATGCA
CGAAGTCAGTTTCCAAGATAAGGAAAAGGAGCACCTGACGAGGCTGCAGGATGCTGAGGAGGTGAAGAAA
GCTCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCGCACCAAAAGCAGCTGTCCAGACTTCGCGATGAGA
TTGAGGAGAAGCAGAGAATCATTGATGAGATCCGGGATTTGAATCAGAAACTGCAACTGGAACAGGAGAG
GCTCAGCTCTGATTATAACAAGCTGAAAATAGAGGACCAGGAGAGAGAAGTGAAACTGGAGAAGCTCCTA
TTGCTCAATGACAAAAGGGAGCAAGCCAGGGAGGACCTCAAGGGACTGGAGGAGACTGTGTCTAGAGAAC
TCCAGACCCTTCATAACCTGCGCAAACTCTTCGTCCAGGATTTGACAACCCGGGTGAAAAAGAGTGTGGA
GCTGGACAGCGACGATGGAGGGGGCAGCGCTGCTCAGAAGCAGAAGATCTCCTTCCTGGAGAACAACCTG
GAACAGCTTACCAAGGTGCACAAGCAGCTGGTCCGGGACAATGCAGATTTGCGCTGTGAACTCCCCAAGC
TGGAGAAGAGGCTTCGTGCTACCGCAGAACGCGTCAAGGCCTTGGAGAGTGCGCTGAAAGAGGCCAAGGA
GAATGCCATGAGGGACCGAAAACGCTACCAGCAGGAAGTAGATCGCATCAAGGAGGCTGTGCGAGCCAAG
AACATGGCCAGGAGGGCACATTCGGCTCAGATCGCCAAGCCCATCCGCCCAGGCCATTACCCAGCATCAT
CTCCGACAGCTGTCCATGCCGTCCGAGGAGGAGGAGGTGGCTCTTCAAACTCTACTCACTACCAGAAATA
A

Translation (956 aa):
MADPAECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACAKQI
VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYL
DKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFL
INIKQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYR
DSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK
EKNKALKSVLQHLEMELNRWRNGEAVPEDEQISAKDQKSLEPCDNTPIIDNITPVVDGISAEKEKYDEEI
TSLYRQLDDKDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQAL
EELAVNYDQKSQEVEDKTRANEQLTDELAQKTTTLTTTQRELSQLQELSNHQKKRATEILNLLLKDLGEI
GGIIGTNDVKTLADVNGVIEEEFTMARLYISKMKSEVKSLVNRSKQLESAQMDSNRKMNASERELAACQL
LISQHEAKIKSLTDYMQNMEQKRRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKEHLTRLQDAEEVKK
ALEQQMESHREAHQKQLSRLRDEIEEKQRIIDEIRDLNQKLQLEQERLSSDYNKLKIEDQEREVKLEKLL
LLNDKREQAREDLKGLEETVSRELQTLHNLRKLFVQDLTTRVKKSVELDSDDGGGSAAQKQKISFLENNL
EQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKALESALKEAKENAMRDRKRYQQEVDRIKEAVRAK
NMARRAHSAQIAKPIRPGHYPASSPTAVHAVRGGGGGSSNSTHYQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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