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Report for CCDS16022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16022.1 Public Mus musculus 2 Orc4 23 108 98 CCDS HistoryNCBI Gene:26428Re-query CCDS DB by CCDS ID:16022.1Re-query CCDS DB by GeneID:26428See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028098.10 ENSMUSP00000028098.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028098.10Link to Ensembl Protein Viewer:ENSMUSP00000028098.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028098Re-query CCDS DB by Protein ID:ENSMUSP00000028098
Original member NCBI NM_001355296.1 NP_001342225.1 Updated not alive Link to Nucleotide Sequence:NM_001355296.1Link to Protein Sequence:NP_001342225.1Re-query CCDS DB by Nucleotide ID:NM_001355296Re-query CCDS DB by Protein ID:NP_001342225
Current member NCBI NM_001355296.2 NP_001342225.1 Accepted alive Link to Nucleotide Sequence:NM_001355296.2Link to Protein Sequence:NP_001342225.1Re-query CCDS DB by Nucleotide ID:NM_001355296Re-query CCDS DB by Protein ID:NP_001342225Link to BLAST:NP_001342225.1
Original member NCBI NM_011958.4 NP_036088.3 Updated not alive Link to Nucleotide Sequence:NM_011958.4Link to Protein Sequence:NP_036088.3Re-query CCDS DB by Nucleotide ID:NM_011958Re-query CCDS DB by Protein ID:NP_036088
Current member NCBI NM_011958.5 NP_036088.3 Accepted alive Link to Nucleotide Sequence:NM_011958.5Link to Protein Sequence:NP_036088.3Re-query CCDS DB by Nucleotide ID:NM_011958Re-query CCDS DB by Protein ID:NP_036088Link to BLAST:NP_036088.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342225.1 433 O88708 433 100% 0 0
NP_036088.3 433 O88708 433 100% 0 0

Chromosomal Locations for CCDS 16022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 48905411 48905599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48909266 48909333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48909419 48909514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48910186 48910294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48912562 48912648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48917165 48917338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48927096 48927247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48929681 48929729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48933080 48933165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48933550 48933622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48936772 48936862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48937452 48937528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48940333 48940383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGAGCAGTCGTAAAACCAAGAGTAATGCACATGCAGAGTGTCTTTCACAGGTACAAAGAATTTTACGTG
AAAGATTTTGTCATCATAGTCCACATAGCAACCTCTTTGGAGTGCAAGTACAATACAAGCATTTGATTGA
GCTACTCAAAAGAACTGCTATCTATGGAGAAAGCAATTCTGTACTCATTGTTGGACCACGAGGATCAGGA
AAGACCACATTATTAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGTGAGTGAAAATGTGATACAAG
TTCACTTAAATGGACTCCTGCAGACAAATGAAAAAATTGCTCTGAAAGAGATCACAAGACAATTAAATCT
AGACAATGTAGTTGAAGATAAAGTTTTTGGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTG
CAAAAAGGTGACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATATTTTTGCTCATC
AGAAAAATCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAGTAGCAGTTAT
TGGACTTACATGTAGATTGGATATTTTGGAACTCTTAGAAAAGAGAGTGAAGTCACGATTTTCTCACCGG
CAGATACATTTAATGAATTCATTTGATTTTCCACAATATTTGAAAATATTTAAAGAACAGTTATCTCTAC
CTGCAGAATTCCCAGATAAGGCTTTTGCTGAGAGATGGAATGAGAATGTTCACTGTCTCTCTGAAGATTC
AACTGTGCTTGAAGTCCTACAGAAACATTTCAGTGTCAACAAAAACTTGCAGTCATTACACATGCTATTG
ATGCTTGCTTTAAATCGAGTAACCGTATCACACCCATTTATGACTTCAGCAGATCTGATGGAGGCACAGC
ATATGTGTAGCTTGGATTCTAAGGCGAATATTGTACATGGTCTGTCAGTCTTGGAAATCTGTCTTATAAT
AGCAATGAAACATTTAAATGACATATATGAAGAGGAGCCCTTTAATTTTCAAATGGTGTATAATGAATTT
CAGAAATTCATTCAAAGAAAGGCCCATTCTGTTTATAACTTTGAGAAACCTGTGGTCATGAAGGCATTTG
AGCACTTACAACAGTTGGAATTAATAAAACCCGTGGAAAGAACTTCAGTAAATTCTCAGAGAGAATACCA
GCTAGTGAAACTACTTTTGGATAATACTCAAATTATGAATGCTCTACAGAAATACTCCAACTGCCCTACA
GATGTTAGGCAGTGGGCAACATCCTCACTAAGCTGGCTGTGA

Translation (433 aa):
MSSRKTKSNAHAECLSQVQRILRERFCHHSPHSNLFGVQVQYKHLIELLKRTAIYGESNSVLIVGPRGSG
KTTLLNHALKELMEIEVSENVIQVHLNGLLQTNEKIALKEITRQLNLDNVVEDKVFGSFAENLSFLLEAL
QKGDRTSSCPVIFILDEFDIFAHQKNQTLLYNLFDISQSAQTPVAVIGLTCRLDILELLEKRVKSRFSHR
QIHLMNSFDFPQYLKIFKEQLSLPAEFPDKAFAERWNENVHCLSEDSTVLEVLQKHFSVNKNLQSLHMLL
MLALNRVTVSHPFMTSADLMEAQHMCSLDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEF
QKFIQRKAHSVYNFEKPVVMKAFEHLQQLELIKPVERTSVNSQREYQLVKLLLDNTQIMNALQKYSNCPT
DVRQWATSSLSWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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