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Report for CCDS16008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16008.1 Public Mus musculus 2 Lhx2 23 108 98 CCDS HistoryNCBI Gene:16870Re-query CCDS DB by CCDS ID:16008.1Re-query CCDS DB by GeneID:16870See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000253.5 ENSMUSP00000000253.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000253.5Link to Ensembl Protein Viewer:ENSMUSP00000000253.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000253Re-query CCDS DB by Protein ID:ENSMUSP00000000253
Original member NCBI NM_010710.4 NP_034840.1 Updated not alive Link to Nucleotide Sequence:NM_010710.4Link to Protein Sequence:NP_034840.1Re-query CCDS DB by Nucleotide ID:NM_010710Re-query CCDS DB by Protein ID:NP_034840
Current member NCBI NM_010710.5 NP_034840.1 Accepted alive Link to Nucleotide Sequence:NM_010710.5Link to Protein Sequence:NP_034840.1Re-query CCDS DB by Nucleotide ID:NM_010710Re-query CCDS DB by Protein ID:NP_034840Link to BLAST:NP_034840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034840.1 406 Q9Z0S2 406 100% 0 0

Chromosomal Locations for CCDS 16008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38351774 38351893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38353311 38353513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38354449 38354852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38359898 38360103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38368842 38369129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGCTGTTCCACAGTCTGTCGGGCCCCGAGGTGCACGGGGTCATCGACGAGATGGACCGCAGGGCCAAGA
GCGAGGCTCCGGCCATCAGCTCCGCCATCGACCGCGGCGACACGGAGACGACCATGCCGTCCATCAGCAG
TGACCGGGCAGCGTTGTGTGCTGGCTGTGGGGGCAAGATCTCTGACCGCTACTACCTGCTGGCAGTAGAC
AAGCAATGGCACATGCGCTGCCTCAAGTGCTGTGAATGCAAGCTCAACCTGGAGTCGGAACTCACCTGCT
TCAGCAAGGATGGCAGCATCTACTGCAAAGAAGACTACTACAGGCGGTTCTCTGTGCAGCGCTGCGCCCG
CTGCCACCTGGGCATCTCGGCCTCAGAGATGGTGATGCGCGCTCGGGACTTGGTTTATCACCTCAACTGC
TTCACATGCACAACGTGTAACAAGATGCTGACGACCGGCGACCATTTCGGCATGAAGGACAGCCTGGTCT
ATTGCCGCTTGCACTTCGAGGCTCTGCTGCAGGGCGAATACCCAGCACACTTTAACCATGCCGACGTGGC
AGCGGCGGCAGCCGCAGCCGCAGCAGCTAAGAGTGCAGGATTGGGCTCAGCCGGGGCTAATCCGCTGGGT
CTTCCCTACTACAACGGCGTGGGCACTGTGCAAAAGGGGAGGCCGAGAAAGCGCAAGAGTCCAGGACCCG
GGGCAGATCTGGCAGCTTACAACGCCGCGCTTAGCTGTAACGAGAACGATGCTGAACACCTGGATCGTGA
CCAGCCCTACCCCAGCAGCCAAAAGACAAAGCGCATGCGCACCTCCTTCAAGCACCACCAGCTTCGGACA
ATGAAGTCTTACTTTGCCATTAACCACAATCCCGATGCCAAGGACTTGAAGCAGCTTGCGCAAAAGACCG
GCCTCACCAAGAGAGTCCTCCAGGTCTGGTTTCAGAATGCCCGGGCCAAGTTCAGGCGCAACCTTTTACG
GCAGGAAAACACGGGCGTGGACAAGACGTCAGATGCCACGCTGCAGACAGGGACGCCGTCAGGGCCCGCC
TCGGAGCTGTCCAACGCCTCGCTCAGCCCCTCCAGCACGCCTACAACCCTCACAGACTTGACTAGCCCCA
CCCTGCCGACTGTGACGTCAGTCTTAACTTCTGTGCCTGGCAACCTGGAGGGCCACGAGCCCCACAGCCC
TTCACAAACGACTCTTACCAACCTTTTCTAA

Translation (406 aa):
MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVD
KQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNC
FTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGSAGANPLG
LPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRT
MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKTSDATLQTGTPSGPA
SELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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