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Report for CCDS15937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15937.1 Public Mus musculus 2 Slc2a8 23 108 98 CCDS HistoryNCBI Gene:56017Re-query CCDS DB by CCDS ID:15937.1Re-query CCDS DB by GeneID:56017See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028129.12 ENSMUSP00000028129.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028129.12Link to Ensembl Protein Viewer:ENSMUSP00000028129.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028129Re-query CCDS DB by Protein ID:ENSMUSP00000028129
Original member NCBI NM_019488.5 NP_062361.1 Updated not alive Link to Nucleotide Sequence:NM_019488.5Link to Protein Sequence:NP_062361.1Re-query CCDS DB by Nucleotide ID:NM_019488Re-query CCDS DB by Protein ID:NP_062361
Current member NCBI NM_019488.6 NP_062361.1 Accepted alive Link to Nucleotide Sequence:NM_019488.6Link to Protein Sequence:NP_062361.1Re-query CCDS DB by Nucleotide ID:NM_019488Re-query CCDS DB by Protein ID:NP_062361Link to BLAST:NP_062361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062361.1 477 Q9JIF3 477 100% 0 0

Chromosomal Locations for CCDS 15937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32973595 32973732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32974838 32974983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32975314 32975484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32975920 32976028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32976137 32976280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32976861 32977060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32980002 32980101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32981361 32981567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32981721 32981883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32981958 32982013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGTCTCCCGAGGACCCCCAGGAGACGCAGCCGCTATTGCGGCCACCGGAAGCCAGGACTCCCCGCGGCC
GCCGGGTCTTCCTCGCTTCCTTCGCCGCCGCTCTGGGACCCCTCAGCTTCGGCTTCGCGCTCGGCTACAG
CTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCGGCCCTGCGCCTCGGAGACAATGCGGCCTCC
TGGTTCGGGGCCGTCGTGACCCTGGGCGCTGCTGCAGGGGGCATACTGGGCGGCTGGCTCCTGGACCGTG
CAGGGCGCAAGCTGAGCCTCTTGCTCTGCACCGTGCCCTTCGTGACTGGCTTTGCTGTCATCACCGCGGC
CCGGGATGTGTGGATGCTGCTCGGAGGCCGCCTCCTCACCGGCCTTGCCTGCGGAGTCGCCTCACTAGTG
GCACCGGTTTACATCTCGGAAATCGCCTACCCAGCTGTCCGAGGACTGCTCGGCTCCTGTGTGCAGCTGA
TGGTTGTCACTGGCATCCTCCTGGCCTATGTGGCAGGCTGGGTCCTAGAGTGGCGCTGGCTGGCCGTGCT
GGGCTGTGTGCCCCCCACCCTCATGCTGCTGCTCATGTGCTACATGCCCGAGACCCCACGTTTTCTCCTC
ACTCAACACCAGTACCAGGAGGCCATGGCTGCCTTGCGCTTCCTGTGGGGCTCTGAGGAGGGCTGGGAAG
AGCCCCCTGTTGGGGCTGAGCACCAGGGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCC
CCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCC
AACAGCATCTTCGAGGAGGCCAAGTTCAAGGACAGCAGCCTGGCCTCGGTCACTGTGGGCATAATCCAGG
TCCTGTTCACTGCTGTGGCGGCCCTCATCATGGACAGAGCAGGGCGAAGGCTGCTCCTGGCCTTGTCGGG
TGTGATCATGGTGTTCAGTATGAGTGCCTTTGGTACCTACTTCAAACTGACCCAGAGCCTCCCCAGCAAC
TCCTCCCACGTAGGCCTGGTGCCCATCGCGGCGGAGCCTGTGGATGTCCAAGTGGGACTGGCCTGGCTGG
CTGTAGGCAGCATGTGCCTCTTCATTGCTGGCTTTGCGGTGGGCTGGGGACCCATCCCCTGGCTCCTCAT
GTCAGAGATCTTCCCTCTGCATGTCAAGGGTGTGGCTACCGGCATCTGTGTCCTCACCAACTGGTTCATG
GCCTTTCTAGTGACCAAAGAGTTCAGCAGCGTCATGGAGATGCTCAGACCCTACGGTGCCTTCTGGCTCA
CCGCTGCCTTCTGCGCTCTCAGTGTCCTATTCACACTGACCGTTGTCCCTGAGACTAAAGGCAGGACTCT
GGAACAAGTCACAGCCCATTTCGAGGGACGATGA

Translation (477 aa):
MSPEDPQETQPLLRPPEARTPRGRRVFLASFAAALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDNAAS
WFGAVVTLGAAAGGILGGWLLDRAGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLV
APVYISEIAYPAVRGLLGSCVQLMVVTGILLAYVAGWVLEWRWLAVLGCVPPTLMLLLMCYMPETPRFLL
TQHQYQEAMAALRFLWGSEEGWEEPPVGAEHQGFQLALLRRPGIYKPLIIGISLMVFQQLSGVNAIMFYA
NSIFEEAKFKDSSLASVTVGIIQVLFTAVAALIMDRAGRRLLLALSGVIMVFSMSAFGTYFKLTQSLPSN
SSHVGLVPIAAEPVDVQVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWFM
AFLVTKEFSSVMEMLRPYGAFWLTAAFCALSVLFTLTVVPETKGRTLEQVTAHFEGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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