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Report for CCDS15923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15923.1 Public Mus musculus 2 St6galnac6 23 108 98 CCDS HistoryNCBI Gene:50935Re-query CCDS DB by CCDS ID:15923.1Re-query CCDS DB by GeneID:50935See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072111.7 ENSMUSP00000071983.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072111.7Link to Ensembl Protein Viewer:ENSMUSP00000071983.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072111Re-query CCDS DB by Protein ID:ENSMUSP00000071983
Original member Current member EBI ENSMUST00000095044.9 ENSMUSP00000092654.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095044.9Link to Ensembl Protein Viewer:ENSMUSP00000092654.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095044Re-query CCDS DB by Protein ID:ENSMUSP00000092654
Original member Current member NCBI NM_016973.3 NP_058669.1 Accepted alive Link to Nucleotide Sequence:NM_016973.3Link to Protein Sequence:NP_058669.1Re-query CCDS DB by Nucleotide ID:NM_016973Re-query CCDS DB by Protein ID:NP_058669Link to BLAST:NP_058669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058669.1 333 Q9JM95-1 333 100% 0 0

Chromosomal Locations for CCDS 15923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32608071 32608096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32609226 32609316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32612224 32612403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32614781 32615187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32618497 32618604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32619340 32619529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGCTTGCTCGAGGCCCCCCAGCCAGTGTGACCCCACAACCCTGCCCCCCGGGCCACCTGCCGGACGCT
GGCCTCTACCCTTCAGCAGACGCCGGAGAGAGATGAGTAGCAACAAAGAGCAGCGGTCAGCAGTGTTTGT
GATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAACGAGGTCTTCCACTAC
GGCTCCCTGCGGGGCCGCACGCGTCGGCCAGTCAACCTCAAGAAGTGGAGTTTCTCCAGCGCCTACTTCC
CTATCCTCGGCAACAAGACGCTGCCGTCCAGGTGCAACCAGTGTGTGATCATCACCAGCTCCAGCCACCT
GCTGGGCACCAAACTGGGCCCTGAGATTGAGCGGGCTGAGTGCACCATCCGCATGAACGATGCTCCCACC
TCTGGCTACTCGGCTGACGTCGGAAACAAAACCACCTTCCGCGTAGTGGCCCATTCCAGTGTATTCCGTG
TGCTGCGGAAGCCCCAGGAATTTGTCAACCGGACCCCTGAGACGGTGTTCATCTTCTGGGGACCCCCAAA
CAAGATGCAGAAGCCCCAGGGCAGCCTCCTGCGCGTCATCCAGCGGGCGGGCCTCATGTTCCCGAACATG
GAGGCCTATGCCGTCTCTCCCGCCCGCATGCAGCAGTTTGACGACCTCTTCCGGGGTGAGACGGGCAAGG
ACAGGGAAAAGTCCCATTCCTGGTTGAGCACGGGCTGGTTTACCATGGTGATTGCGGTGGAATTGTGTGA
CCATGTGCACGTGTATGGCATGGTCCCTCCTGACTACTGCAGCCAGCGGCCCCGCCTGCAGCGCATGCCA
TACCACTACTATGAACCCAAGGGGCCGGACGAGTGTGTCACCTACATCCAGAACGAGCACAGCCGTAAGG
GCAATCACCACCGCTTCATCACCGAGAAGAGGGTCTTCTCGTCCTGGGCCCAACTCTACGGTATCACCTT
CTCCCACCCCTCCTGGACCTAG

Translation (333 aa):
MACSRPPSQCDPTTLPPGPPAGRWPLPFSRRRREMSSNKEQRSAVFVILFALITILILYSSNSANEVFHY
GSLRGRTRRPVNLKKWSFSSAYFPILGNKTLPSRCNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPT
SGYSADVGNKTTFRVVAHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKPQGSLLRVIQRAGLMFPNM
EAYAVSPARMQQFDDLFRGETGKDREKSHSWLSTGWFTMVIAVELCDHVHVYGMVPPDYCSQRPRLQRMP
YHYYEPKGPDECVTYIQNEHSRKGNHHRFITEKRVFSSWAQLYGITFSHPSWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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