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Report for CCDS15865.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15865.2 Public Mus musculus 2 Dync2i2 23 108 98 CCDS HistoryNCBI Gene:71820Re-query CCDS DB by CCDS ID:15865.2Re-query CCDS DB by GeneID:71820See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15865.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15865.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113711.2 ENSMUSP00000109340.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113711.2Link to Ensembl Protein Viewer:ENSMUSP00000109340.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113711Re-query CCDS DB by Protein ID:ENSMUSP00000109340
Original member Current member NCBI NM_001008498.2 NP_001008498.2 Accepted alive Link to Nucleotide Sequence:NM_001008498.2Link to Protein Sequence:NP_001008498.2Re-query CCDS DB by Nucleotide ID:NM_001008498Re-query CCDS DB by Protein ID:NP_001008498Link to BLAST:NP_001008498.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008498.2 537 Q5U4F6 537 100% 0 0

Chromosomal Locations for CCDS 15865.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30031734 30031972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30032073 30032230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30032402 30032634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30032750 30032917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30033274 30033383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30033806 30033963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30034763 30034872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30038175 30038426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30048684 30048869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGCAATGTGCGCGTCGCCCAGGCCTTTTCGGCGCGTTGGAAGCGCTGGAGCTGCTGCCCTGGCTGCTG
GCGGGGCTGGCGGCGCCGAACGGCGAGGGCGGCCTGCGCCTCTTCAGGATGAGACCCTGGGCGTGGCGTC
CGTGCCCTCGCAGTGGAGGAGCGTCCAGGGGATCCGCGGGGAGACGAAAAGTTGCCAGACAGCGGGCATT
GCCACAGCCGAGTCGTCTGCCCAGGCCCGGACACATGCAGATGCCCAGGTACAGACAGAGGCTCCCGAAG
AGCCAGCGGCCATGGCTCCTGTTTCCCAGTATGACACCCTCAGGCTGGAAGCCTTTCTCCGGAGGGTGGA
GGCCATGGTCATCCGGGAGCTGAACAACAACTGGCAGAGTCATGCCTTCGATGGCTATGAGGTGAACTGG
ACTGAGCAGCAGCAGACGGTGTCCTGTCTGCACACCCTGGTCTACCCCCTAGCCCAAGGGCAGGGTCTGC
ATGTGACCGGCATTTCCTGGAACTCGACAGGCTCTGTGCTGGCCTGTGCCTATGGTCGGCTAGATGATGG
AGACTGGAGTACACTCAAGTCCTACGTGTGTACTTGGAACCTGGACCGCCAAGGCCTGAATCCCCAGCAG
CCATCAGTAGTGGTGGAGGTGCCGAGTGCTGTCATGTGCCTGGCCTTTCATCCCACACAGCCCTCCCACA
TTGCCGGGGGGCTGTATAGCGGGGAAGTGCTGGTGTGGGACATGAGCCGACCTGAGGACCCACTGCTTTG
GCGTACAGGTCTGACAGATGACACTCACACAGACCCAGTGTATCAGGTGCTGTGGTTACCTGAACCCCGG
CATAGCCACCGCTTCCAGGTACTGAGTGCGGCCACAGATGGCAAGGTGTTGCTCTGGAGAGGCAGTGGGG
CCGGTCAGCTGCGGCTCACCAAGGGCTTTGCCCTGGCTGTGCAGCAGCTGCCTCGGAGCACCAAGCTGAA
GAAGCCACCCCGTGGAGAGACTGAGGTGGGGGTGACATCAGTGGCCTTCTCCAGCTTTGACTCCAGCCTT
TTCGTTCTGGGCACAGAAGGTGGCTTCCCCCTCAAGTGTTCCCTGGCGTCAGAGGTAGCTGCTCTCACTC
GGATGCCCAGCTCTGTGCCGCTGAGGGCCCCGGTGCAGTTCACCTTCTCTCCCCATGGTGGCCCCGTGTA
TTCTGTGAGCTGTTCCCCCTTTCACAGGAATCTCTTCCTGAGCGCTGGGACCGATGGCCACGTCCACCTG
TACTCCATGCTGCAGGCTCAGCCCCTTACCTCACTGCAGCTCTCTCACAAGTACCTGTTTGCTGTGCGCT
GGTCCCCTGTGCGCCCCTTGGTTTTTGCTGCTGCTTCAGGGGAAGGTGATGTACAACTTTTTGACCTCCA
GAAAAGCTCACAGAAACCCACAGTTTCTATAACACAAACCCAAGATGGAAGTCCTGTCTACTGTCTCGAG
TTTAACAGCCAGCAGACACAGCTCTTAGCCGCTGGTGATGCTAAGGGCATGGTCAAAGTGTGGCAGCTGA
GCACAGCCTTCACAGAACAAGGGCCCCGGGAGGTGGAGGACTTGGATCAGCTAGAAGCAGAAATCACTAC
CTGA

Translation (537 aa):
MAMCASPRPFRRVGSAGAAALAAGGAGGAERRGRPAPLQDETLGVASVPSQWRSVQGIRGETKSCQTAGI
ATAESSAQARTHADAQVQTEAPEEPAAMAPVSQYDTLRLEAFLRRVEAMVIRELNNNWQSHAFDGYEVNW
TEQQQTVSCLHTLVYPLAQGQGLHVTGISWNSTGSVLACAYGRLDDGDWSTLKSYVCTWNLDRQGLNPQQ
PSVVVEVPSAVMCLAFHPTQPSHIAGGLYSGEVLVWDMSRPEDPLLWRTGLTDDTHTDPVYQVLWLPEPR
HSHRFQVLSAATDGKVLLWRGSGAGQLRLTKGFALAVQQLPRSTKLKKPPRGETEVGVTSVAFSSFDSSL
FVLGTEGGFPLKCSLASEVAALTRMPSSVPLRAPVQFTFSPHGGPVYSVSCSPFHRNLFLSAGTDGHVHL
YSMLQAQPLTSLQLSHKYLFAVRWSPVRPLVFAAASGEGDVQLFDLQKSSQKPTVSITQTQDGSPVYCLE
FNSQQTQLLAAGDAKGMVKVWQLSTAFTEQGPREVEDLDQLEAEITT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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