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Report for CCDS15788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15788.1 Public Mus musculus 2 Obp2a 23 108 98 CCDS HistoryNCBI Gene:227627Re-query CCDS DB by CCDS ID:15788.1Re-query CCDS DB by GeneID:227627See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077667.3 ENSMUSP00000076851.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077667.3Link to Ensembl Protein Viewer:ENSMUSP00000076851.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077667Re-query CCDS DB by Protein ID:ENSMUSP00000076851
Original member Current member NCBI NM_153558.1 NP_705786.1 Accepted alive Link to Nucleotide Sequence:NM_153558.1Link to Protein Sequence:NP_705786.1Re-query CCDS DB by Nucleotide ID:NM_153558Re-query CCDS DB by Protein ID:NP_705786Link to BLAST:NP_705786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705786.1 176 Q8K1H9 176 100% 0 0

Chromosomal Locations for CCDS 15788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25700091 25700177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25700710 25700843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25701079 25701149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25701562 25701675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25702177 25702278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25702730 25702752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGAAGAGCCTGCTCCTCACCATCCTGCTGCTGGGGCTGGTGGCTGTCCTGAAGGCTCAGGAAGCCCCGC
CAGATGACCTGGTGGATTACTCTGGGATCTGGTACGCAAAGGCCATGGTACACAATGGTACCCTACCCAG
TCACAAGATACCCAGTATAGTTTTCCCTGTGAGAATAATAGCTCTGGAAGAAGGAGACTTGGAGACCACA
GTTGTATTCTGGAACAATGGTCATTGCCGTGAGTTTAAATTCGTGATGAAGAAAACAGAAGAGCCTGGCA
AATACACCGCTTTTCATAACACGAAGGTTATTCATGTGGAAAAGACGTCGGTGAATGAGCACTACATTTT
CTACTGCGAAGGCCGGCACAATGGGACGTCGTCATTCGGGATGGGAAAGCTCATGGGGAGAGACTCTGGT
GAAAATCCAGAGGCCATGGAAGAATTTAAGAATTTCATAAAGCGCATGAATCTCCGACTGGAAAACATGT
TTGTGCCAGAGATCGGAGATAAATGTGTTGAAAGTGACTAG

Translation (176 aa):
MKSLLLTILLLGLVAVLKAQEAPPDDLVDYSGIWYAKAMVHNGTLPSHKIPSIVFPVRIIALEEGDLETT
VVFWNNGHCREFKFVMKKTEEPGKYTAFHNTKVIHVEKTSVNEHYIFYCEGRHNGTSSFGMGKLMGRDSG
ENPEAMEEFKNFIKRMNLRLENMFVPEIGDKCVESD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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