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Report for CCDS15687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15687.1 Public Mus musculus 2 Il15ra 23 108 98 CCDS HistoryNCBI Gene:16169Re-query CCDS DB by CCDS ID:15687.1Re-query CCDS DB by GeneID:16169See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128156.8 ENSMUSP00000126364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128156.8Link to Ensembl Protein Viewer:ENSMUSP00000126364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128156Re-query CCDS DB by Protein ID:ENSMUSP00000126364
Original member Current member EBI ENSMUST00000138349.7 ENSMUSP00000131473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138349.7Link to Ensembl Protein Viewer:ENSMUSP00000131473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138349Re-query CCDS DB by Protein ID:ENSMUSP00000131473
Original member Current member EBI ENSMUST00000135341.7 ENSMUSP00000132731.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135341.7Link to Ensembl Protein Viewer:ENSMUSP00000132731.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000135341Re-query CCDS DB by Protein ID:ENSMUSP00000132731
Original member NCBI NM_001271497.1 NP_001258426.1 Updated not alive Link to Nucleotide Sequence:NM_001271497.1Link to Protein Sequence:NP_001258426.1Re-query CCDS DB by Nucleotide ID:NM_001271497Re-query CCDS DB by Protein ID:NP_001258426
Current member NCBI NM_001271497.2 NP_001258426.1 Accepted alive Link to Nucleotide Sequence:NM_001271497.2Link to Protein Sequence:NP_001258426.1Re-query CCDS DB by Nucleotide ID:NM_001271497Re-query CCDS DB by Protein ID:NP_001258426Link to BLAST:NP_001258426.1
Original member NCBI NM_133836.2 NP_598597.1 Updated not alive Link to Nucleotide Sequence:NM_133836.2Link to Protein Sequence:NP_598597.1Re-query CCDS DB by Nucleotide ID:NM_133836Re-query CCDS DB by Protein ID:NP_598597
Current member NCBI NM_133836.3 NP_598597.1 Accepted alive Link to Nucleotide Sequence:NM_133836.3Link to Protein Sequence:NP_598597.1Re-query CCDS DB by Nucleotide ID:NM_133836Re-query CCDS DB by Protein ID:NP_598597Link to BLAST:NP_598597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258426.1 123 Q60819-5 123 100% 0 0
NP_598597.1 123 Q60819-5 123 100% 0 0

Chromosomal Locations for CCDS 15687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11723448 11723610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11724096 11724128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11730571 11730646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11733150 11733249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGACCACAGAGACAGCTATTATGCCTGGCTCCAGGCTGACACCATCCCAAACAACTTCTGCAGGAACTA
CAGGGACAGGCAGTCACAAGTCCTCCCGAGCCCCATCTCTTGCAGCAACAATGACCTTGGAGCCTACAGC
CTCCACCTCCCTCAGGATAACAGAGATTTCTCCCCACAGTTCCAAAATGACGAAAGTGGCCATCTCTACA
TCGGTCCTCTTGGTTGGTGCAGGGGTTGTGATGGCTTTCCTGGCCTGGTACATCAAATCAAGGCAGCCTT
CTCAGCCGTGCCGTGTTGAGGTGGAAACCATGGAAACAGTACCAATGACTGTGAGGGCCAGCAGCAAGGA
GGATGAAGACACAGGAGCCTAA

Translation (123 aa):
MTTETAIMPGSRLTPSQTTSAGTTGTGSHKSSRAPSLAATMTLEPTASTSLRITEISPHSSKMTKVAIST
SVLLVGAGVVMAFLAWYIKSRQPSQPCRVEVETMETVPMTVRASSKEDEDTGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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