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Report for CCDS15640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15640.1 Public Mus musculus 1 Cd34 23 108 98 CCDS HistoryNCBI Gene:12490Re-query CCDS DB by CCDS ID:15640.1Re-query CCDS DB by GeneID:12490See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016638.7 ENSMUSP00000016638.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016638.7Link to Ensembl Protein Viewer:ENSMUSP00000016638.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000016638Re-query CCDS DB by Protein ID:ENSMUSP00000016638
Original member NCBI NM_133654.3 NP_598415.1 Updated not alive Link to Nucleotide Sequence:NM_133654.3Link to Protein Sequence:NP_598415.1Re-query CCDS DB by Nucleotide ID:NM_133654Re-query CCDS DB by Protein ID:NP_598415
Current member NCBI NM_133654.4 NP_598415.1 Accepted alive Link to Nucleotide Sequence:NM_133654.4Link to Protein Sequence:NP_598415.1Re-query CCDS DB by Nucleotide ID:NM_133654Re-query CCDS DB by Protein ID:NP_598415Link to BLAST:NP_598415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598415.1 382 Q64314-1 382 100% 0 0

Chromosomal Locations for CCDS 15640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 194938966 194939044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194947839 194948006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194949305 194949564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194950939 194951019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194958417 194958573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194958810 194958862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194959066 194959230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194959936 194960121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGCAGGTCCACAGGGACACGCGCGCGGGGCTCCTGCTGCCATGGCGCTGGGTAGCTCTCTGCCTGATGA
GTCTGCTGCATCTAAATAACTTGACTTCTGCTACCACGGAGACTTCTACACAAGGAATATCCCCATCAGT
TCCTACCAATGAGTCTGTTGAGGAAAATATCACATCTAGCATCCCTGGAAGTACCAGCCACTACTTGATC
TATCAGGACAGCAGTAAGACCACACCAGCCATCTCAGAGACTATGGTCAACTTTACAGTTACCTCTGGGA
TCCCTTCAGGCTCTGGAACTCCACACACTTTTTCACAACCACAGACTTCCCCAACTGGCATACTGCCTAC
TACTTCAGACAGTATTTCCACTTCAGAGATGACCTGGAAGTCCAGCCTGCCATCTATAAATGTTTCTGAT
TATTCGCCTAATAATAGCAGCTTTGAGATGACATCACCCACCGAGCCATATGCTTACACATCATCTTCTG
CTCCGAGTGCCATTAAGGGAGAAATCAAATGCTCTGGAATCCGAGAAGTGAGGTTGGCCCAGGGTATCTG
CCTGGAACTAAGTGAAGCATCTAGTTGTGAGGAGTTTAAGAAGGAAAAGGGAGAAGATCTAATTCAAATA
CTGTGTGAAAAGGAGGAGGCTGAGGCTGATGCTGGTGCTAGTGTCTGCTCCCTGCTTCTAGCCCAGTCTG
AGGTTAGGCCTGAGTGTTTGCTGATGGTCTTGGCCAATAGCACAGAACTTCCCAGCAAACTCCAGCTTAT
GGAAAAGCACCAATCTGACTTGAGAAAGCTGGGGATCCAAAGCTTCAATAAACAAGATATCGGGAGCCAC
CAGAGCTATTCCCGAAAGACTCTTATTGCATTGGTCACCTCTGGAGTTCTGCTGGCCATCTTGGGCACCA
CTGGTTATTTCCTGATGAACCGTCGCAGTTGGAGCCCTACAGGAGAAAGGCTGGGTGAAGACCCTTATTA
CACGGAGAATGGTGGAGGCCAGGGCTATAGCTCAGGACCTGGGGCCTCCCCTGAGACTCAGGGAAAGGCC
AATGTGACCCGAGGGGCTCAGGAGAACGGGACCGGCCAGGCCACTTCCAGAAACGGCCATTCAGCAAGAC
AACATGTGGTGGCTGACACAGAACTGTGA

Translation (382 aa):
MQVHRDTRAGLLLPWRWVALCLMSLLHLNNLTSATTETSTQGISPSVPTNESVEENITSSIPGSTSHYLI
YQDSSKTTPAISETMVNFTVTSGIPSGSGTPHTFSQPQTSPTGILPTTSDSISTSEMTWKSSLPSINVSD
YSPNNSSFEMTSPTEPYAYTSSSAPSAIKGEIKCSGIREVRLAQGICLELSEASSCEEFKKEKGEDLIQI
LCEKEEAEADAGASVCSLLLAQSEVRPECLLMVLANSTELPSKLQLMEKHQSDLRKLGIQSFNKQDIGSH
QSYSRKTLIALVTSGVLLAILGTTGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGASPETQGKA
NVTRGAQENGTGQATSRNGHSARQHVVADTEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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