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Report for CCDS15621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15621.1 Public Mus musculus 1 Dtl 23 108 98 CCDS HistoryNCBI Gene:76843Re-query CCDS DB by CCDS ID:15621.1Re-query CCDS DB by GeneID:76843See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027933.10 ENSMUSP00000027933.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027933.10Link to Ensembl Protein Viewer:ENSMUSP00000027933.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027933Re-query CCDS DB by Protein ID:ENSMUSP00000027933
Original member Current member NCBI NM_029766.3 NP_084042.1 Accepted alive Link to Nucleotide Sequence:NM_029766.3Link to Protein Sequence:NP_084042.1Re-query CCDS DB by Nucleotide ID:NM_029766Re-query CCDS DB by Protein ID:NP_084042Link to BLAST:NP_084042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084042.1 729 Q3TLR7-1 729 100% 0 0

Chromosomal Locations for CCDS 15621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191539243 191539341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191540704 191541536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191546491 191546623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191548296 191548385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191552988 191553100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191556441 191556545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191556784 191556887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191558061 191558134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191561425 191561537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191563111 191563176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191568291 191568411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191568495 191568556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191569667 191569765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191570579 191570704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191575349 191575400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGCTCTTCAACTCGGTACTCCGCCAGCCGCAGCTCGGCGTCCTGAGGAACGGGTGGTCTTCACATTACC
CTCTACAATCCCTTCTAAGTGGTTATCAGTGCAACTGTAACGATGAACACACGTCTTATGGAGAAACAGG
AGTCCCAGTTCCTCCTTTTGGATGCACCTTCTGTACCGCTCCCAGTATGGAGCATATATTAGCAGTTGCT
AATGAAGAAGGCTTTGTCAGATTATATAATACAGAATCACAAACTAGCAAAAAGACATGCTTCAAGGAGT
GGATGGCTCACTGGAATGCTGTCTTTGACTTGGCCTGGGTCCCTGGTGAACTTAAACTTGTTACAGCAGC
CGGTGATCAGACAGCCAAATTTTGGGATGTAAGAGCTGGTGAGCTGATGGGGACATGCAAAGGCCACCAG
TGCAGCCTCAAGTCTGTAGCCTTTCCCAAGTTTCAAAAAGCTGTGTTCTCTACAGGGGGGAGAGACGGCA
ACATTATGATCTGGGACACCAGGTGTAACAAAAAAGATGGATTTTATAGACAAGTGAATCAAATCAGTGG
AGCTCACAATACTGCAGACAAGCAAACCCCTTCAAAGCCCAAGAAGAAACAAAATTCAAAAGGACTTGCT
CCTGCTGTGGATTCCCAGCAGAGTGTTACTGTGGTCCTCTTTCAGGATGAGAATACATTAGTCTCAGCAG
GAGCCGTGGATGGAATAATCAAAGTATGGGATTTGCGCAAGAATTACACTGCTTATCGACAAGAACCCAT
AGCATCCAAGTCTTTCCTGTACCCAGGTACCAGCACTCGAAAGCTAGGATACTCGAGTTTGGTTTTAGAC
TCTACTGGCTCTACTTTATTTGCTAACTGCACAGATGACAACATCTATATGTTCAATATGACTGGCTTAA
AGACTTCTCCGGTGGCTGTCTTCAATGGACACCAGAACTCTACCTTTTATGTAAAATCAAGTCTTAGTCC
AGATGACCAGTTTTTAATCAGTGGTTCAAGTGATGAAGCTGCCTACATTTGGAAGGTTTCCATGCCATGG
CATCCTCCTACTGTGCTCCTGGGTCATTCTCAAGAGGTCACGTCTGTGTGCTGGTGTCCATCAGACTTCA
CCAAGATTGCAACCTGCTCTGATGATAATACACTGAAAATCTGGCGCTTGAATAGAGGCCTAGAGGAGAA
ACCAGGTGATAAACATTCCATAGTGGGTTGGACCTCTCAGAAGAAAAAAGAAGTGAAAGCCTGCCCAGTA
ACGGTACCAAGTAGCCAGAGTACTCCTGCCAAAGCTCCCAGAGCCAAGAGCAGTCCATCCATCTCCTCTC
CTTCGTCAGCAGCTTGTACTCCGAGCTGTGCAGGAGACCTCCCTCTTCCTTCAAGTACCCCCACATTCTC
AGTCAAAACCACTCCTGCCACGACCCGTTCTTCAGTCAGCAGAAGAGGCTCCATCTCTTCTGTGTCTCCC
AAGCCACTCTCATCTTTCAAGATGTCGCTTAGAAACTGGGTGACCCGAACACCTTCCTCATCACCACCTG
TCACTCCACCTGCTTCTGAGACAAAGATCTCATCTCCAAGAAAAGCTCTTATTCCTGTGAGCCAGAAGTC
ATCACAGGCAGATGCTTGCTCTGAATCTAGAAATAGAGTGAAGAGGCGTCTTGACTCAAGCTGTCTGGAG
AGTGTGAAACAAAAGTGTGTGAAGAGTTGCAACTGTGTCACTGAGCTTGACGGCCAAGCGGAGAGTCTTC
GTTTGGATCTGTGCTGCCTTTCCGGCACCCAGGAAGTCCTTAGCCAAGACTCCGAGGGTCCTACCAAATC
AAGCAAGACTGAAGGTGCTGGCACAAGCATCTCAGAACCTCCTTCTCCTGTCAGTCCTTATGCTTCTGAA
GGCTGTGGACCACTGCCTCTTCCTTTGAGACCTTGTGGAGAAGGATCTGAGATGGTGGGCAAAGAGAATA
GCTCTCCAGAGAATAAGAACTGGTTGTTGGCCATAGCAGCCAAACGCAAGGCAGAAAATTCATCCCCAAG
AAGTCCATCATCTCAGACACCCAGTTCCAGGAGACAAAGTGGGAAGACGTCACCAGGCCCGGTCACCATT
ACTCCCAGCTCCATGAGGAAGATATGTACATACTTTCGTAGAAAGACTCAAGATGACTTCTGCAGTCCTG
AACACTCAACTGAATTATAG

Translation (729 aa):
MLFNSVLRQPQLGVLRNGWSSHYPLQSLLSGYQCNCNDEHTSYGETGVPVPPFGCTFCTAPSMEHILAVA
NEEGFVRLYNTESQTSKKTCFKEWMAHWNAVFDLAWVPGELKLVTAAGDQTAKFWDVRAGELMGTCKGHQ
CSLKSVAFPKFQKAVFSTGGRDGNIMIWDTRCNKKDGFYRQVNQISGAHNTADKQTPSKPKKKQNSKGLA
PAVDSQQSVTVVLFQDENTLVSAGAVDGIIKVWDLRKNYTAYRQEPIASKSFLYPGTSTRKLGYSSLVLD
STGSTLFANCTDDNIYMFNMTGLKTSPVAVFNGHQNSTFYVKSSLSPDDQFLISGSSDEAAYIWKVSMPW
HPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWRLNRGLEEKPGDKHSIVGWTSQKKKEVKACPV
TVPSSQSTPAKAPRAKSSPSISSPSSAACTPSCAGDLPLPSSTPTFSVKTTPATTRSSVSRRGSISSVSP
KPLSSFKMSLRNWVTRTPSSSPPVTPPASETKISSPRKALIPVSQKSSQADACSESRNRVKRRLDSSCLE
SVKQKCVKSCNCVTELDGQAESLRLDLCCLSGTQEVLSQDSEGPTKSSKTEGAGTSISEPPSPVSPYASE
GCGPLPLPLRPCGEGSEMVGKENSSPENKNWLLAIAAKRKAENSSPRSPSSQTPSSRRQSGKTSPGPVTI
TPSSMRKICTYFRRKTQDDFCSPEHSTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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