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Report for CCDS15606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15606.1 Public Mus musculus 1 Esrrg 23 108 98 CCDS HistoryNCBI Gene:26381Re-query CCDS DB by CCDS ID:15606.1Re-query CCDS DB by GeneID:26381See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027906.12 ENSMUSP00000027906.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027906.12Link to Ensembl Protein Viewer:ENSMUSP00000027906.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027906Re-query CCDS DB by Protein ID:ENSMUSP00000027906
Original member Current member NCBI NM_011935.3 NP_036065.1 Accepted alive Link to Nucleotide Sequence:NM_011935.3Link to Protein Sequence:NP_036065.1Re-query CCDS DB by Nucleotide ID:NM_011935Re-query CCDS DB by Protein ID:NP_036065Link to BLAST:NP_036065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036065.1 458 P62509-1 458 100% 0 0

Chromosomal Locations for CCDS 15606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 187997997 187998052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188043334 188043749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188066341 188066457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188146313 188146423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188150179 188150340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188198576 188198845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188210895 188211139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGATTCGGTAGAACTTTGCCTGCCTGAATCTTTTTCCCTGCACTACGAAGAAGAGCTTCTCTGCAGAA
TGTCAAACAAAGATCGACACATTGATTCCAGCTGTTCGTCCTTCATCAAGACGGAACCCTCCAGCCCAGC
CTCCCTGACGGACAGCGTCAACCACCACAGCCCTGGTGGGTCTTCCGACGCCAGTGGGAGTTACAGTTCA
ACCATGAATGGCCATCAGAACGGACTGGACTCGCCACCTCTCTACCCCTCTGCTCCGATCCTGGGAGGCA
GCGGGCCTGTCCGGAAACTGTATGATGACTGCTCCAGCACCATCGTAGAGGATCCCCAGACCAAGTGTGA
ATATATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGTGTGTGGCGACATCGCCTCTGGGTACCACTAT
GGGGTTGCATCATGTGAAGCCTGCAAGGCATTCTTCAAGAGGACGATTCAAGGTAACATAGAGTACAGCT
GCCCAGCCACGAATGAATGTGAGATCACAAAGCGCAGACGCAAATCCTGCCAGGCCTGCCGCTTCATGAA
GTGTCTCAAAGTGGGCATGCTGAAAGAAGGGGTCCGTCTTGACAGAGTGCGTGGAGGTCGGCAGAAGTAC
AAGCGCAGAATAGATGCTGAGAACAGCCCATACCTGAACCCTCAGCTGGTGCAGCCAGCCAAAAAGCCAT
ATAACAAGATTGTCTCGCATTTGTTGGTGGCTGAACCAGAGAAGATCTATGCCATGCCTGACCCTACTGT
CCCCGACAGTGACATCAAAGCCCTCACCACACTCTGTGACTTGGCTGACCGAGAGTTGGTGGTTATCATT
GGATGGGCAAAACATATTCCAGGCTTCTCCACACTGTCCCTGGCAGACCAGATGAGCCTCCTCCAGAGTG
CATGGATGGAGATTCTGATCCTCGGCGTTGTGTACCGATCGCTTTCGTTTGAGGATGAACTTGTCTATGC
AGACGATTATATAATGGATGAAGACCAGTCTAAATTAGCAGGCCTTCTTGACCTAAATAATGCTATCCTG
CAGCTGGTGAAGAAGTACAAGAGCATGAAGCTAGAGAAGGAAGAATTCGTCACCCTCAAAGCAATAGCTC
TTGCTAATTCAGATTCCATGCATATAGAAGATGTGGAAGCTGTGCAGAAACTTCAGGATGTGTTACATGA
GGCCCTGCAGGATTACGAGGCTGGCCAGCACATGGAAGACCCTCGCCGTGCAGGCAAGATGCTGATGACG
CTGCCGCTGCTGAGGCAGACCTCCACCAAGGCAGTCCAGCACTTCTACAACATCAAACTCGAAGGCAAAG
TGCCCATGCACAAACTTTTTTTGGAAATGCTGGAGGCCAAGGTCTGA

Translation (458 aa):
MDSVELCLPESFSLHYEEELLCRMSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGSYSS
TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLVCGDIASGYHY
GVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKY
KRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVII
GWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL
QLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT
LPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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