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Report for CCDS1556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1556.1 Public Homo sapiens 1 PSEN2 24 110 108 CCDS HistoryNCBI Gene:5664Re-query CCDS DB by CCDS ID:1556.1Re-query CCDS DB by GeneID:5664See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1556.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366779.6 ENSP00000355741.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366779.6Link to Ensembl Protein Viewer:ENSP00000355741.2Re-query CCDS DB by Nucleotide ID:ENST00000366779Re-query CCDS DB by Protein ID:ENSP00000355741
Original member Current member EBI ENST00000366782.6 ENSP00000355746.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366782.6Link to Ensembl Protein Viewer:ENSP00000355746.2Re-query CCDS DB by Nucleotide ID:ENST00000366782Re-query CCDS DB by Protein ID:ENSP00000355746
Original member Current member EBI ENST00000366783.8 ENSP00000355747.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366783.8Link to Ensembl Protein Viewer:ENSP00000355747.3Re-query CCDS DB by Nucleotide ID:ENST00000366783Re-query CCDS DB by Protein ID:ENSP00000355747
Original member Current member EBI ENST00000524196.6 ENSP00000429036.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524196.6Link to Ensembl Protein Viewer:ENSP00000429036.2Re-query CCDS DB by Nucleotide ID:ENST00000524196Re-query CCDS DB by Protein ID:ENSP00000429036
Original member Current member EBI ENST00000626989.3 ENSP00000486498.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000626989.3Link to Ensembl Protein Viewer:ENSP00000486498.2Re-query CCDS DB by Nucleotide ID:ENST00000626989Re-query CCDS DB by Protein ID:ENSP00000486498
Original member Current member EBI ENST00000677414.1 ENSP00000503116.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677414.1Link to Ensembl Protein Viewer:ENSP00000503116.1Re-query CCDS DB by Nucleotide ID:ENST00000677414Re-query CCDS DB by Protein ID:ENSP00000503116
Original member Current member EBI ENST00000676884.1 ENSP00000503200.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676884.1Link to Ensembl Protein Viewer:ENSP00000503200.1Re-query CCDS DB by Nucleotide ID:ENST00000676884Re-query CCDS DB by Protein ID:ENSP00000503200
Original member Current member EBI ENST00000679098.1 ENSP00000504303.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679098.1Link to Ensembl Protein Viewer:ENSP00000504303.1Re-query CCDS DB by Nucleotide ID:ENST00000679098Re-query CCDS DB by Protein ID:ENSP00000504303
Original member Current member EBI ENST00000679088.1 ENSP00000504727.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679088.1Link to Ensembl Protein Viewer:ENSP00000504727.1Re-query CCDS DB by Nucleotide ID:ENST00000679088Re-query CCDS DB by Protein ID:ENSP00000504727
Original member Current member EBI ENST00000678233.1 ENSP00000504728.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678233.1Link to Ensembl Protein Viewer:ENSP00000504728.1Re-query CCDS DB by Nucleotide ID:ENST00000678233Re-query CCDS DB by Protein ID:ENSP00000504728
Original member Current member NCBI NM_000447.3 NP_000438.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000447.3Link to Protein Sequence:NP_000438.2Re-query CCDS DB by Nucleotide ID:NM_000447Re-query CCDS DB by Protein ID:NP_000438Link to BLAST:NP_000438.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000438.2 448 P49810-1 448 100% 0 0

Chromosomal Locations for CCDS 1556.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 226881908 226882048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226883705 226883919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226885538 226885679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226888091 226888158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226888829 226889049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226890035 226890133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226891278 226891361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226891743 226891844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226894007 226894125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226895424 226895579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGCTCACATTCATGGCCTCTGACAGCGAGGAAGAAGTGTGTGATGAGCGGACGTCCCTAATGTCGGCTG
AGAGCCCCACGCCGCGCTCCTGCCAGGAGGGCAGGCAGGGCCCAGAGGATGGAGAGAACACTGCCCAGTG
GAGAAGCCAGGAGAACGAGGAGGACGGTGAGGAGGACCCTGACCGCTATGTCTGTAGTGGGGTTCCCGGG
CGGCCGCCAGGCCTGGAGGAAGAGCTGACCCTCAAATACGGAGCGAAGCACGTGATCATGCTGTTTGTGC
CTGTCACTCTGTGCATGATCGTGGTGGTAGCCACCATCAAGTCTGTGCGCTTCTACACAGAGAAGAATGG
ACAGCTCATCTACACGCCATTCACTGAGGACACACCCTCGGTGGGCCAGCGCCTCCTCAACTCCGTGCTG
AACACCCTCATCATGATCAGCGTCATCGTGGTTATGACCATCTTCTTGGTGGTGCTCTACAAGTACCGCT
GCTACAAGTTCATCCATGGCTGGTTGATCATGTCTTCACTGATGCTGCTGTTCCTCTTCACCTATATCTA
CCTTGGGGAAGTGCTCAAGACCTACAATGTGGCCATGGACTACCCCACCCTCTTGCTGACTGTCTGGAAC
TTCGGGGCAGTGGGCATGGTGTGCATCCACTGGAAGGGCCCTCTGGTGCTGCAGCAGGCCTACCTCATCA
TGATCAGTGCGCTCATGGCCCTAGTGTTCATCAAGTACCTCCCAGAGTGGTCCGCGTGGGTCATCCTGGG
CGCCATCTCTGTGTATGATCTCGTGGCTGTGCTGTGTCCCAAAGGGCCTCTGAGAATGCTGGTAGAAACT
GCCCAGGAGAGAAATGAGCCCATATTCCCTGCCCTGATATACTCATCTGCCATGGTGTGGACGGTTGGCA
TGGCGAAGCTGGACCCCTCCTCTCAGGGTGCCCTCCAGCTCCCCTACGACCCGGAGATGGAAGAAGACTC
CTATGACAGTTTTGGGGAGCCTTCATACCCCGAAGTCTTTGAGCCTCCCTTGACTGGCTACCCAGGGGAG
GAGCTGGAGGAAGAGGAGGAAAGGGGCGTGAAGCTTGGCCTCGGGGACTTCATCTTCTACAGTGTGCTGG
TGGGCAAGGCGGCTGCCACGGGCAGCGGGGACTGGAATACCACGCTGGCCTGCTTCGTGGCCATCCTCAT
TGGCTTGTGTCTGACCCTCCTGCTGCTTGCTGTGTTCAAGAAGGCGCTGCCCGCCCTCCCCATCTCCATC
ACGTTCGGGCTCATCTTTTACTTCTCCACGGACAACCTGGTGCGGCCGTTCATGGACACCCTGGCCTCCC
ATCAGCTCTACATCTGA

Translation (448 aa):
MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPG
RPPGLEEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVL
NTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWN
FGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVET
AQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFGEPSYPEVFEPPLTGYPGE
ELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLLLLAVFKKALPALPISI
TFGLIFYFSTDNLVRPFMDTLASHQLYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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