NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15432.1 Reviewed, update pending Mus musculus 1 Sele 23 108 98 CCDS HistoryNCBI Gene:20339Re-query CCDS DB by CCDS ID:15432.1Re-query CCDS DB by GeneID:20339See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15432.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027874.5 ENSMUSP00000027874.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027874.5Link to Ensembl Protein Viewer:ENSMUSP00000027874.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027874Re-query CCDS DB by Protein ID:ENSMUSP00000027874
Original member NCBI NM_011345.2 NP_035475.1 Updated not alive Link to Nucleotide Sequence:NM_011345.2Link to Protein Sequence:NP_035475.1Re-query CCDS DB by Nucleotide ID:NM_011345Re-query CCDS DB by Protein ID:NP_035475
Current member NCBI NM_011345.3 NP_035475.2 Pending alive Link to Nucleotide Sequence:NM_011345.3Link to Protein Sequence:NP_035475.2Re-query CCDS DB by Nucleotide ID:NM_011345Re-query CCDS DB by Protein ID:NP_035475Link to BLAST:NP_035475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035475.2 612 Q00690 612 100% 0 0

Chromosomal Locations for CCDS 15432.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164048686 164048743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164049215 164049598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164050080 164050187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164050644 164050832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164051537 164051722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164051825 164052013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164052965 164053153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164053536 164053724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164053818 164053994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164054617 164054727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164055554 164055575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164055677 164055734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGAAAGCAACTGCTGGAGTCATGAATGCCTCGCGCTTTCTCTCTGCTCTTGTTTTTGTTCTCCTCGCTG
GAGAGAGCACAGCTTGGTACTACAATGCCTCCAGTGAGCTCATGACGTATGATGAAGCCAGTGCATACTG
TCAGCGGGACTACACACATCTGGTGGCAATTCAGAACAAGGAAGAGATCAACTACCTTAACTCCAATCTG
AAACATTCACCGAGTTACTACTGGATTGGAATCAGAAAAGTCAATAACGTATGGATCTGGGTGGGGACGG
GGAAGCCTCTGACAGAGGAAGCTCAGAACTGGGCTCCAGGTGAACCAAACAACAAACAAAGAAATGAGGA
CTGTGTAGAGATTTACATCCAACGAACCAAAGACTCGGGCATGTGGAATGACGAGAGATGTAACAAAAAG
AAGCTGGCTCTGTGCTACACAGCTTCGTGTACCAATGCATCCTGCAGTGGTCATGGTGAATGCATAGAGA
CCATCAATAGTTACACCTGCAAGTGCCACCCTGGCTTCCTGGGACCCAACTGTGAGCAAGCTGTGACTTG
CAAACCACAGGAACACCCTGACTATGGAAGCCTGAACTGCTCCCACCCGTTCGGCCCCTTCAGCTATAAT
TCCTCCTGCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGT
CCTCTGGAGAGTGGAGTGCGCCTGCTCCAGCCTGCCATGTGGTTGAATGTGAAGCTTTGACCCACCCTGC
CCACGGTATCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAACACGACATGCACGTTTGACTGT
GTGGAAGGGTACAGGCGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCTGGCATCTGGGATAACGAGA
CGCCATCATGCAAAGCTGTGACCTGTGACGCCATCCCTCAGCCTCAGAATGGCTTTGTGAGCTGCAGCCA
CTCAACAGCTGGAGAACTTGCGTTTAAGTCATCCTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCAG
GGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCC
AGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCA
AAATGGGTCCAGTTGTGAGTTCTCCTGCGAAGAAGGATTTGAACTGAAGGGATCAAGAAGACTTCAGTGT
GGTCCAAGAGGGGAATGGGATAGCAAGAAGCCCACGTGTTCAGCTGTGAAATGTGATGATGTCCCTCGGC
CCCAGAATGGCGTCATGGAGTGTGCTCATGCTACTACTGGAGAATTCACCTACAAGTCCTCATGTGCCTT
TCAATGCAATGAGGGCTTTAGCTTGCATGGCTCAGCTCAACTTGAGTGCACATCTCAGGGAAAGTGGACC
CAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATGAGCT
GCAGCGGAACAGCAGTTTTCGGCACAGTGTGTGAGTTTACATGTCCTGATGATTGGACACTCAATGGATC
TGCAGTTCTGACGTGTGGTGCCACGGGACGCTGGTCTGGGATGCCGCCTACCTGTGAAGCCCCAGTCAGC
CCCACCCGTCCCTTGGTAGTTGCACTTTCTGCGGCAGGAACCTCACTCCTGACATCGTCCTCATTGCTCT
ACTTGTTGATGAGATACTTTCGGAAGAAAGCAAAGAAATTTGTTCCTGCTAGCAGCTGCCAAAGCCTTCA
ATCGTTTGAAAACTACCATGTGCCTTCTTACAACGTCTAG

Translation (619 aa):
MKATAGVMNASRFLSALVFVLLAGESTAWYYNASSELMTYDEASAYCQRDYTHLVAIQNKEEINYLNSNL
KHSPSYYWIGIRKVNNVWIWVGTGKPLTEEAQNWAPGEPNNKQRNEDCVEIYIQRTKDSGMWNDERCNKK
KLALCYTASCTNASCSGHGECIETINSYTCKCHPGFLGPNCEQAVTCKPQEHPDYGSLNCSHPFGPFSYN
SSCSFGCKRGYLPSSMETTVRCTSSGEWSAPAPACHVVECEALTHPAHGIRKCSSNPGSYPWNTTCTFDC
VEGYRRVGAQNLQCTSSGIWDNETPSCKAVTCDAIPQPQNGFVSCSHSTAGELAFKSSCNFTCEQSFTLQ
GPAQVECSAQGQWTPQIPVCKAVQCEALSAPQQGNMKCLPSASGPFQNGSSCEFSCEEGFELKGSRRLQC
GPRGEWDSKKPTCSAVKCDDVPRPQNGVMECAHATTGEFTYKSSCAFQCNEGFSLHGSAQLECTSQGKWT
QEVPSCQVVQCPSLDVPGKMNMSCSGTAVFGTVCEFTCPDDWTLNGSAVLTCGATGRWSGMPPTCEAPVS
PTRPLVVALSAAGTSLLTSSSLLYLLMRYFRKKAKKFVPASSCQSLQSFENYHVPSYNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH