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Report for CCDS15413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15413.1 Public Mus musculus 1 Dars2 23 108 98 CCDS HistoryNCBI Gene:226539Re-query CCDS DB by CCDS ID:15413.1Re-query CCDS DB by GeneID:226539See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035430.3 ENSMUSP00000041851.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035430.3Link to Ensembl Protein Viewer:ENSMUSP00000041851.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035430Re-query CCDS DB by Protein ID:ENSMUSP00000041851
Original member Current member NCBI NM_172644.4 NP_766232.1 Accepted alive Link to Nucleotide Sequence:NM_172644.4Link to Protein Sequence:NP_766232.1Re-query CCDS DB by Nucleotide ID:NM_172644Re-query CCDS DB by Protein ID:NP_766232Link to BLAST:NP_766232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766232.1 653 Q8BIP0 653 100% 0 0

Chromosomal Locations for CCDS 15413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161041716 161041930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161043613 161043688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161044959 161045069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161045258 161045476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161046777 161046929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161049938 161050000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161051331 161051438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161053941 161054120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161056461 161056530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161057447 161057553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161060045 161060091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161060736 161060859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161062782 161062877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161063247 161063348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161065225 161065291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161069080 161069179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161069993 161070116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGTATCTTGGTTTTTGGTTAAGTCGTCTATGCAGGGGTTTATCCAGACCCATCGGGAAGACCATGCGGC
CAATCTGGGGTTCTCTTTCCAGAAATCTGGCGTTGAGTTCACAAAGAATTCCAGAATTCAGTAGCTTTGT
TGCTCGGACCAACACATGTGGAGAGTTGCGTTCGTCCCACTTAGGCCAAGAAGTCACTCTGTGTGGATGG
ATTCAGTACCGCAGGCAGAACACCTTCTTAGTCCTAAGAGATTGCCACGGCCTTGTTCAGATTCTCATTC
CCCAGGATGAGTCAGCCGCATCTGTGAGGAGGATTTTGTGTGAAGCCCCTGTGGAGTCTGTGGTGAGAGT
ATCTGGGACAGTAATCTCCCGTCCTCCAGGACAAGAGAATCCGAAAATGCCGACGGGTGAGATTGAAATC
AAAGTTAAAACAGCTGAGCTCCTGAATGCCTGCAAAAAGCTGCCCTTTGAGATTAAAGACTTTGTGAAGA
AAACAGAGGCGCTCCGTTTGCAGTATCGCTACTTAGATCTGCGCAGCTTCCAGATGCAGTACAACTTGCG
GCTGAGGTCGCAGATGGTCATGAAAATGCGGGAATATCTCTGTAATCTGCACGGGTTTGTGGATATAGAA
ACCCCAACCTTGTTTAAGAGGACCCCTGGAGGTGCCAAGGAGTTTTTAGTACCATCCAGGGAACCTGGAA
AGTTTTATTCCCTCCCTCAAAGTCCTCAGCAATTTAAGCAGCTTCTGATGGTTGGAGGTTTAGACAGGTA
TTTTCAGGTCGCTCGGTGTTACCGAGATGAAGGCTCAAGACCGGATAGACAGCCAGAGTTCACTCAGATT
GACATAGAGATGTCCTTTGTAGAGCAGACTGGCATTCAGCGTTTAGTTGAGGGTTTGCTGCAGTATTCCT
GGCCTGGTGATAAAGACCCTCTAGTGACTCCTTTCCCTTCCATGACTTTTGCTGAGGCACTGGCCACCTA
TGGAACTGATAAGCCAGATACTCGCTTTGGGATGAAGATTGTGGATGTCAGTGATGTGTTCAGAAACACA
GAGCTCAGATTCCTTCAGGATGCACTGGCTAAGCCCCAAGGAACTGTCAAAGCAATATGTGTTCATGACG
GAGCGAAATACTTAAGGAAGGAAGACATTGAGTTCATTAGGAAGTTTGCAGTTCACCATTTCAGTCAGGA
AGTCCTACCTATATTCCTGAATGCCAAGAAGAACTGGAGTTCGCCATTTGCTAAGTTCATAATGGAGGAG
GAAAGACTGGAATTAGCCAGATCGATGGAGATACAAGAAGAAGACATAGTGTTACTGACTGCTGGGGAAC
ATGAGAAAGCATGCTCTCTGTTGGGAAAGTTACGGCTAGAGTGTGCAGACCTTTTGGAGATGAGAGGAGC
GGTGCTCCGAGACCCAGCAGTGTTCTCTTTTCTTTGGGTGGTTGACTTTCCACTCTTCCTTGCCAAGGAA
GAGAGTCCCACAGAGCTGGAGTCAGCCCATCACCCATTTACTGCTCCTAACTCCAGTGACATTCACCTCC
TCTATACTGAGCCGGAAAAGGTTCGTGGCCAACACTATGACTTGGTTTTAAACGGCAATGAGATAGGAGG
TGGTTCTGTCCGAATCCATGATGCACAGCTACAGAGGTACATCCTGGAAACACTGCTAAAGGAAGATGTG
AAATTGCTTTCCCATCTGCTTCAGGCTTTAGACTATGGGGCACCCCCACACGGAGGAATTGCCTTAGGGT
TAGACAGACTGGTATGTCTTGTCACGGGAGCACCCAGCATCAGAGATGTCATAGCCTTCCCTAAATCCTA
CCGAGGACAGGACCTTATGAGCAATGCTCCAGACTCCGTGTCTCCAGAAGAGCTGAAGCCTTACCATATC
CACGTCTTGTGGCCAGCAGACTCAGAAGAGGAGAGTGCATCCGCCACACCTTCCAAACACTTGAGCTCTT
AA

Translation (653 aa):
MYLGFWLSRLCRGLSRPIGKTMRPIWGSLSRNLALSSQRIPEFSSFVARTNTCGELRSSHLGQEVTLCGW
IQYRRQNTFLVLRDCHGLVQILIPQDESAASVRRILCEAPVESVVRVSGTVISRPPGQENPKMPTGEIEI
KVKTAELLNACKKLPFEIKDFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIE
TPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQI
DIEMSFVEQTGIQRLVEGLLQYSWPGDKDPLVTPFPSMTFAEALATYGTDKPDTRFGMKIVDVSDVFRNT
ELRFLQDALAKPQGTVKAICVHDGAKYLRKEDIEFIRKFAVHHFSQEVLPIFLNAKKNWSSPFAKFIMEE
ERLELARSMEIQEEDIVLLTAGEHEKACSLLGKLRLECADLLEMRGAVLRDPAVFSFLWVVDFPLFLAKE
ESPTELESAHHPFTAPNSSDIHLLYTEPEKVRGQHYDLVLNGNEIGGGSVRIHDAQLQRYILETLLKEDV
KLLSHLLQALDYGAPPHGGIALGLDRLVCLVTGAPSIRDVIAFPKSYRGQDLMSNAPDSVSPEELKPYHI
HVLWPADSEEESASATPSKHLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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