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Report for CCDS15354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15354.1 Public Mus musculus 1 Pdc 23 108 98 CCDS HistoryNCBI Gene:20028Re-query CCDS DB by CCDS ID:15354.1Re-query CCDS DB by GeneID:20028See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165062.7 ENSMUSP00000131631.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165062.7Link to Ensembl Protein Viewer:ENSMUSP00000131631.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165062Re-query CCDS DB by Protein ID:ENSMUSP00000131631
Original member Current member EBI ENSMUST00000191228.6 ENSMUSP00000141136.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191228.6Link to Ensembl Protein Viewer:ENSMUSP00000141136.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191228Re-query CCDS DB by Protein ID:ENSMUSP00000141136
Original member Current member NCBI NM_001159730.1 NP_001153202.1 Accepted alive Link to Nucleotide Sequence:NM_001159730.1Link to Protein Sequence:NP_001153202.1Re-query CCDS DB by Nucleotide ID:NM_001159730Re-query CCDS DB by Protein ID:NP_001153202Link to BLAST:NP_001153202.1
Original member Current member NCBI NM_024458.2 NP_077778.1 Accepted alive Link to Nucleotide Sequence:NM_024458.2Link to Protein Sequence:NP_077778.1Re-query CCDS DB by Nucleotide ID:NM_024458Re-query CCDS DB by Protein ID:NP_077778Link to BLAST:NP_077778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153202.1 244 Q9QW08 244 100% 0 0
NP_077778.1 244 Q9QW08 244 100% 0 0

Chromosomal Locations for CCDS 15354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150328340 150328400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150330726 150330871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150332975 150333502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGAAGAAGCCGCCAGCCAAAGCTTAGAAGAAGATTTTGAAGGACAGGCCACGCACACAGGACCCAAAG
GAGTAATAAATGATTGGAGAAAGTTTAAATTAGAAAGTGAAGATGGTGATTCAATTCCACCCAGCAAGAA
GGAAATCCTCAGACAAATGTCCTCTCCTCAGAGCAGAGATGACTCAAAAGAAAGAATGAGCAGAAAGATG
AGCATTCAAGAATATGAACTCATTCATCAAGACAAAGAAGATGAGAGTTGCCTTCGCAAATACCGGAGGC
AGTGCATGCAGGATATGCATCAGAAGTTGAGTTTTGGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAAC
AGGGGAGCAATTCCTGGAAACCATCGAGAAGGAGCAGAAGGTCACCACAATTGTGGTTAACATTTACGAG
GATGGTGTCAGGGGCTGCGATGCACTCAACAGCAGCTTAGCGTGCCTTGCAGTAGAGTACCCAATGGTCA
AGTTCTGTAAAATAAAAGCTTCTAATACCGGAGCGGGGGACCGCTTTTCCACAGACGTACTCCCTACGTT
GCTGGTGTACAAAGGTGGGGAACTCATAAGCAATTTTATTAGTGTGGCTGAACAATTTGCTGAAGAATTT
TTTGCTGTGGATGTGGAGTCTTTCCTAAATGAATATGGATTACTACCAGAAAGAGAGATACATGACCTAG
AGCAGACCAACATGGAAGACGAGGACATTGAATAA

Translation (244 aa):
MEEAASQSLEEDFEGQATHTGPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDSKERMSRKM
SIQEYELIHQDKEDESCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYE
DGVRGCDALNSSLACLAVEYPMVKFCKIKASNTGAGDRFSTDVLPTLLVYKGGELISNFISVAEQFAEEF
FAVDVESFLNEYGLLPEREIHDLEQTNMEDEDIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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