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Report for CCDS15351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15351.1 Public Mus musculus 1 Brinp3 23 108 98 CCDS HistoryNCBI Gene:215378Re-query CCDS DB by CCDS ID:15351.1Re-query CCDS DB by GeneID:215378See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074622.10 ENSMUSP00000074201.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074622.10Link to Ensembl Protein Viewer:ENSMUSP00000074201.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074622Re-query CCDS DB by Protein ID:ENSMUSP00000074201
Original member Current member EBI ENSMUST00000166814.7 ENSMUSP00000126074.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166814.7Link to Ensembl Protein Viewer:ENSMUSP00000126074.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166814Re-query CCDS DB by Protein ID:ENSMUSP00000126074
Original member Current member NCBI NM_001145807.1 NP_001139279.1 Accepted alive Link to Nucleotide Sequence:NM_001145807.1Link to Protein Sequence:NP_001139279.1Re-query CCDS DB by Nucleotide ID:NM_001145807Re-query CCDS DB by Protein ID:NP_001139279Link to BLAST:NP_001139279.1
Original member Current member NCBI NM_001357571.1 NP_001344500.1 Accepted alive Link to Nucleotide Sequence:NM_001357571.1Link to Protein Sequence:NP_001344500.1Re-query CCDS DB by Nucleotide ID:NM_001357571Re-query CCDS DB by Protein ID:NP_001344500Link to BLAST:NP_001344500.1
Original member Current member NCBI NM_153539.3 NP_705767.3 Accepted alive Link to Nucleotide Sequence:NM_153539.3Link to Protein Sequence:NP_705767.3Re-query CCDS DB by Nucleotide ID:NM_153539Re-query CCDS DB by Protein ID:NP_705767Link to BLAST:NP_705767.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139279.1 766 Q499E0 766 100% 0 0
NP_001344500.1 766 Q499E0 766 100% 0 0
NP_705767.3 766 Q499E0 766 100% 0 0

Chromosomal Locations for CCDS 15351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 146514718 146514953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146682576 146682766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146701656 146701846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146746480 146746585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146751755 146751991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146831561 146831783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146901001 146902117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGATATGGCGGCGCAGAGCTGGTGCTGAACTGTCCTCTCTGATGGCTCTATGGGAGTGGATAGTACTGA
GTCTTCATTGCTGGGTTTTAGCGGTTGCTGCTGTCTCTGACCAGCATGCCACAAGCCCCTTCGACTGGCT
CCTCTCTGATAAGGGACCCTTCCATCGCTCACAGGAGTACACAGATTTTGTGGACAGAAGCCGACAGGGA
TTTAGCACAAGATACAAGATATACAGGGAGTTTGGTCGTTGGAAGGTAAATAACCTTGCAGTTGAGAGAA
GAAATTTCCTTGGTTCTCCTCTGCCTCTTGCCCCTGAGTTCTTCCGCAACATAAGACTTTTGGGACGACG
ACCTACTCTACAGCAAATCACAGAAAATCTTATCAAGAAATATGGGACTCATTTCTTGCTATCAGCTACT
CTGGGAGGAGAGGAGTCACTCACAATTTTTGTGGACAAGCGGAAGCTGAGCAAAAGATCTGAAGGAAGTG
AAACCAGCACCAATAGTTCGTCTGTTACCCTGGAGACCTTACATCAATTGGCTGCTTCCTATTTTATTGA
CAGGGACAGCACCCTTCGCAGACTTCACCATATCCAAATTGCATCCACTGCCATCAAGGTGACAGAAACA
CGGACAGGTCCTCTTGGCTGCAGTAACTATGACAACCTAGATTCTGTCAGCTCTGTTCTGGTTCAGAGTC
CTGAGAATAAAATTCAGTTGCAAGGGCTTCAAGTTCTCCTTCCCGACTACCTTCAGGAACGTTTTGTACA
GGCAGCACTGAGCTACATTGCTTGCAATTCTGAGGGCGAGTTTATCTGCAAGGATAATGACTGCTGGTGC
CACTGTGGTCCAAAATTCCCAGAATGTAATTGCCCTTCCATGGATATTCAAGCCATGGAAGAGAATCTTC
TTCGAATAACAGAAACATGGAAAGCCTACAACAGTGACTTTGAAGATTCAGATGAATTCAAGTTCTTTAT
GAAAAGACTACCCATGAATTATTTTCTCAACACTTCAACTATAATGCATTTGTGGACAATGGATTCTAAT
TTTCAGCGCCGCTACGAACAACTGGAGAACAGCATGAAACAGCTTTTCCTGAAGGCACACAGAATTGTAC
ACAAGCTCTTTAGCCTTAGCAAACGGTGCCACAAGCAGCCTCTCATCAGCCTGCCGAGACAGAGAACATC
AACCTACTGGCTCACTCGCATCCAGTCTTTTCTCTACTGCAATGAGAATGGCCTTCTGGGAAGCTTCTCC
GAGGAAACCCACTCCTGCACATGCCCCAACGACCAGGTAGTGTGCACAGCCTTTCTGCCCTGTACTGTGG
GCGATGCCTCTGCCTGCCTTACCTGTGCACCTGACAACCGTACCCGGTGTGGCACCTGCAACACAGGCTA
CATGCTGAGCCAGGGACTCTGCAAGCCTGAAGTCGCTGAGTCAACCGATCACTACATTGGCTTTGAGACC
GACCTACAAGACCTAGAGATGAAATACCTGTTGCAGAAAACAGATAGACGAATAGAAGTACATGCCATCT
TTATCAGCAATGACATGCGCCTCAACAGCTGGTTTGATCCTTCCTGGAGAAAGCGGATGCTCCTGACCTT
GAAGAGTAACAAATACAAGTCCAGTCTGGTCCACATGATCTTGGGTCTCTCTTTACAGATTTGCTTAACT
AAAAACAGCACGTTGGAGCCAGTGCTGGCTGTTTATGTCAATCCCTTTGGAGGCAGCCACTCCGAGAGCT
GGTTTATGCCTGTGAGTGAGAGCAGCTTTCCAGACTGGGAGCGGACTAAGCTGGACCTCCCTCTACAGTG
CTATAACTGGACACTGACTCTGGGAAACAAATGGAAGACATTTTTTGAGACAGTACACATCTACCTGAGG
AGTCGCATCAAGGCAAATGGCCCCAACAGCAATGAGAGCATTTATTATGAGCCTTTGGAGTTTATTGACC
CATCCCGGAACCTGGGCTACATGAAAATCAACAACATCCAAGTGTTTGGCTACAGCATGCACTTTGACCC
TGAAGCCATTCGGGACCTGATTTTGCAGCTGGACTACCCTTATACTCAGGGATCCCAGGACTCGGCACTT
TTGCAGCTACTAGAGATAAGAGACCGTGTAAATAAACTCTCCCCACCCGGTCAGCGCCGCCTGGATCTGT
TTTCTTGCTTGCTTCGTCATAGACTCAAGCTGTCTACTAGTGAGGTGGTGAGAATTCAGTCTGCTCTTCA
GGCATTTAATGCCAAGTTGCCAAACACAGTGGATTATGACACAACCAAATTATGTAGTTAA

Translation (766 aa):
MIWRRRAGAELSSLMALWEWIVLSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQG
FSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSAT
LGGEESLTIFVDKRKLSKRSEGSETSTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTET
RTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKDNDCWC
HCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEDSDEFKFFMKRLPMNYFLNTSTIMHLWTMDSN
FQRRYEQLENSMKQLFLKAHRIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFS
EETHSCTCPNDQVVCTAFLPCTVGDASACLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFET
DLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLT
KNSTLEPVLAVYVNPFGGSHSESWFMPVSESSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLR
SRIKANGPNSNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSAL
LQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTVDYDTTKLCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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