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Report for CCDS15327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15327.1 Public Mus musculus 1 Zfp281 23 108 98 CCDS HistoryNCBI Gene:226442Re-query CCDS DB by CCDS ID:15327.1Re-query CCDS DB by GeneID:226442See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047734.14 ENSMUSP00000039003.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047734.14Link to Ensembl Protein Viewer:ENSMUSP00000039003.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047734Re-query CCDS DB by Protein ID:ENSMUSP00000039003
Original member Current member EBI ENSMUST00000112046.1 ENSMUSP00000107677.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112046.1Link to Ensembl Protein Viewer:ENSMUSP00000107677.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112046Re-query CCDS DB by Protein ID:ENSMUSP00000107677
Original member Current member NCBI NM_001160251.1 NP_001153723.1 Accepted alive Link to Nucleotide Sequence:NM_001160251.1Link to Protein Sequence:NP_001153723.1Re-query CCDS DB by Nucleotide ID:NM_001160251Re-query CCDS DB by Protein ID:NP_001153723Link to BLAST:NP_001153723.1
Original member Current member NCBI NM_177643.4 NP_808311.1 Accepted alive Link to Nucleotide Sequence:NM_177643.4Link to Protein Sequence:NP_808311.1Re-query CCDS DB by Nucleotide ID:NM_177643Re-query CCDS DB by Protein ID:NP_808311Link to BLAST:NP_808311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153723.1 893 Q99LI5 893 100% 0 0
NP_808311.1 893 Q99LI5 893 100% 0 0

Chromosomal Locations for CCDS 15327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 136625286 136627967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGAAAATCGGCAGCGGGTTCCTTAGCGGCGGCGGCGGTCCCAGCAGTAGCGGTGGTAGCGGCTCCGGCG
GCAGCTCCGGCAGCGCCAGCGGCGGCAGCGGCGGCGGCAGGAGAGCAGAGATGGAGCCCACCTTCCCCCA
GAGTATGGTTATGTTCAACCACCGGCTTCCCCCGGTCACCAGCTTCACCCGGCCGGCGGGGACGGCCGCC
CCTCCCCCGCAGTGCGTGTTATCCTCCTCTACCTCCGCAGCCCCGGCCGCTGAGCCCCCCCCTCCGCCAG
CCCCGGACATGACTTTCAAGAAGGAGCCGGCGGCGTCAGCCGCGGCCTTCCCTTCGCAGAGGACCTCCTG
GGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTCCCAC
CACCACCATCACCACCACCACTATGGGGGGCTGTTCGCTGGGGCTGAAGAGCGATCACCAGGCCTAGGAG
GAGGGGAAGGGGGGAGCCACGGCGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACC
GGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCA
AAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCCAAGAGGA
AGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGAGGGAGAAGGTGCCGTCCTGTCCCCAAGTCAGAAACC
TCATATCTGTGATCACTGTAGTGCTGCTTTCAGGAGCTCCTACCACCTGCGGAGACATGTCCTCATCCAC
ACGGGCGAAAGGCCTTTCCAGTGCAGCCAGTGTAGTATGGGTTTCATCCAGAAATACCTACTGCAGAGAC
ACGAGAAAATTCACAGCAGAGAGAAACCCTTTGGGTGCGATCAGTGCAGCATGAAGTTTATTCAGAAGTA
CCATATGGAGAGACACAAGAGGACACATAGTGGAGAAAAGCCATACAAGTGTGACACTTGCCAACAGTAT
TTTTCAAGGACTGACAGATTGTTGAAGCACAGGCGCACGTGTGGTGAAGCCATAGCAAAAGGAGCCGCTA
GTGCAGAACCTGGGTCATCAAACCATAACAGTATGGGTAACCTGGCTGTGTTGTCTCAGGGAAATACAAG
TTCCTCAAGGAGAAAGTCGAAGTCGAAAAGCATAGCTATTGAAAATAAGGAACACAAGACTGGCAAAACA
AATGAATCACAAATGTCAAACAATATAAACATGCAGAGTTATTCAGTAGAAATGCCTACTGTGTCTACCA
GTGGGAGCATAATTGGCACTGGAATAGATGAACTGCAGAAAAGGGTGCCAAAATTGATCTTTAAGAAAGG
AAGCAGAAAGAATGCAGATAAAAGCTACCTTAATTTTGTGTCACCGTTACCAGACGTAGTTGGGCAGAAA
TCCTTGTCTGGTAAGCCAGGTGGCTCACTTGGCATCGTATCGAATAATAGTGTGGAGACCATTAGTCTTC
TCCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGTAATTATGATGATGCCATGCAGTTTTCAAAGAA
GAGAAGATACCTACCAACTGCCAGCAGCAACAGTGCCTTTTCTATCAATGTAGGACACATGGTCTCCCAG
CAGTCAGTCATTCAGTCTGCAGGGGTCAGTGTTTTGGACAATGAGGCGCCATTGTCACTTATTGACTCCT
CAGCTCTAAATGCTGAAATTAAGTCTTGTCACGACAAGTCTGGAATTCCTGATGAGGTTTTACAAAGTAT
TTTGGATCAGTACTCTGGCAAATCAGAAACACAGAAGGAGGATCCTTTCAATTTAACAGAACCACGAGTG
GATTTACACACCTCAGGAGAACACTCTGAATTGGTTCAAGAAGAAAATTTGAGCCCAGGCACCCAAACAC
CTTCAAATGATAAAACAAGCATGTTGCAAGAATACTCCAAATACCTCCAACAGGCTTTCGAAAAATCCAC
TAATGCAGGTTTTACTCTTGGACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACT
TTGTTTCCAGAAAAACAGATATACACTACATCTCCTTTGGAGTGTGGTTTTGGCCAGTCTGTTACCTCAG
TGCTGCCATCTTCGTTGCCAAAGCCTCCTTTTGGGATGTTGTTTGGATCTCAACCAGGTCTTTATTTATC
TGCTTTGGATGCTACACATCAGCAGTTGACACCTTCCCAGGAGCTGGATGATCTGATAGATTCTCAGAAG
AACTTAGAGACATCATCAGCCTTCCAGTCCTCATCTCAGAAATTGACTAGCCAGAAGGAACAACAGAAAA
ATTTAGAGTCCTCAACGAGCTTTCAGATTCCATCTCAGGAGTTAGCTAGCCAGATTGATCCTCAGAAAGA
CATAGAGCCTAGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGC
AGCAGGGTGCCAATGACCTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGTAAGGACTTCAGTGT
CAGATTTCTCAGGGTATACAAATATGATGTCTGATGTAAGTGAGCCATGTAGTACAAGAGTAAAGACACC
CACCAGCCAGAGTTACAGGTAA

Translation (893 aa):
MKIGSGFLSGGGGPSSSGGSGSGGSSGSASGGSGGGRRAEMEPTFPQSMVMFNHRLPPVTSFTRPAGTAA
PPPQCVLSSSTSAAPAAEPPPPPAPDMTFKKEPAASAAAFPSQRTSWGFLQSLVSIKQEKPADPEEQPSH
HHHHHHHYGGLFAGAEERSPGLGGGEGGSHGVIQDLSLLHQHAQQQPAQHHRDVLLSSGSRTDEHGNQEP
KQDANVKKAKRPKPESQGIKAKRKPSASSKPLVGEGEGAVLSPSQKPHICDHCSAAFRSSYHLRRHVLIH
TGERPFQCSQCSMGFIQKYLLQRHEKIHSREKPFGCDQCSMKFIQKYHMERHKRTHSGEKPYKCDTCQQY
FSRTDRLLKHRRTCGEAIAKGAASAEPGSSNHNSMGNLAVLSQGNTSSSRRKSKSKSIAIENKEHKTGKT
NESQMSNNINMQSYSVEMPTVSTSGSIIGTGIDELQKRVPKLIFKKGSRKNADKSYLNFVSPLPDVVGQK
SLSGKPGGSLGIVSNNSVETISLLQSTSGKQGPISSNYDDAMQFSKKRRYLPTASSNSAFSINVGHMVSQ
QSVIQSAGVSVLDNEAPLSLIDSSALNAEIKSCHDKSGIPDEVLQSILDQYSGKSETQKEDPFNLTEPRV
DLHTSGEHSELVQEENLSPGTQTPSNDKTSMLQEYSKYLQQAFEKSTNAGFTLGHGFQFVSLSSPLHNHT
LFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGLYLSALDATHQQLTPSQELDDLIDSQK
NLETSSAFQSSSQKLTSQKEQQKNLESSTSFQIPSQELASQIDPQKDIEPRTTYQIENFAQAFGSQFKSG
SRVPMTFITNSNGEVDHRVRTSVSDFSGYTNMMSDVSEPCSTRVKTPTSQSYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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