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Report for CCDS15296.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15296.2 Public Mus musculus 1 Etnk2 23 108 98 CCDS HistoryNCBI Gene:214253Re-query CCDS DB by CCDS ID:15296.2Re-query CCDS DB by GeneID:214253See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15296.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135222.8 ENSMUSP00000114272.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135222.8Link to Ensembl Protein Viewer:ENSMUSP00000114272.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000135222Re-query CCDS DB by Protein ID:ENSMUSP00000114272
Original member NCBI NM_175443.5 NP_780652.2 Updated not alive Link to Nucleotide Sequence:NM_175443.5Link to Protein Sequence:NP_780652.2Re-query CCDS DB by Nucleotide ID:NM_175443Re-query CCDS DB by Protein ID:NP_780652
Current member NCBI NM_175443.6 NP_780652.2 Accepted alive Link to Nucleotide Sequence:NM_175443.6Link to Protein Sequence:NP_780652.2Re-query CCDS DB by Nucleotide ID:NM_175443Re-query CCDS DB by Protein ID:NP_780652Link to BLAST:NP_780652.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780652.2 385 A7MCT6-1 385 100% 0 0

Chromosomal Locations for CCDS 15296.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133363764 133364018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133365576 133365835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133368750 133368872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133373135 133373277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133374527 133374610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133376906 133377051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133378449 133378522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133379317 133379389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCTGTGCCCCCTTCAGCTCCAGTGCCGTGCTCGCCCTTTTACCTGCGGAGGCAGGAGCCTTGCCCGC
AGTGCTCATGGAGCATGGAGGAGAAGGCGGTGGCCAGCGCCGGCTGCTGGGAGCCTCCAGGGCCCCCGAG
GGCCGCCGTCCCATGCTTCAGCGTCACGGTGGAACAGGACGACATCCTCCCCGGTGCCCTGCGCCTCATT
CGGGAGCTGCGGCCGCACTGGAAGCCCGAACAAGTTCGGACCAAGCGCTTCAAAGACGGCATCACCAACA
AGCTATTGGCCTGCTATGTGGAGGAGGACATGCGGGACTGCGTGTTGGTCCGGGTGTATGGGGAGCGCAC
GGAGTTGCTGGTGGACCGGGAGAATGAGGTCAGAAACTTCCAACTGCTGCGAGCACACGGCTGCGCCCCC
AAACTCTACTGTACCTTTCAGAACGGGCTGTGCTACGAGTATGTGCAGGGTGTGGCCCTGGGACCTGAAC
ACATCCGAGAGCCCCAGCTCTTCAGGTTGATCGCCTTAGAAATGGCTAAGATTCACACCATCCACGCCAA
TGGCAGCCTGCCTAAGCCCACGCTCTGGCATAAGATGCATCGTTATTTCACGCTGGTCAAGGATGAGATC
AGTCCCAGCCTTTCTGCAGATGTCCCCAAAGTGGAGGTGTTGGAACAGGAGCTGGCCTGGTTGAAGGAAC
ACCTGTCCCAGTTGGATTCCCCTGTGGTGTTCTGTCACAATGATCTACTCTGCAAGAATATCATCTATGA
CAGTGACAAAGGCCGCGTGTGCTTTATTGACTATGAATATGCAGGGTACAACTACCAGGCATTTGACATT
GGCAACCATTTCAATGAGTTTGCAGGTGTGAATGTGGTTGATTACAGCCGGTATCCAGCTCGGGAGACCC
AGGTGCAGTGGCTGCGTTATTATCTTGAGGCGCAGAAGGGGACAGCTGCATCCCCCAGGGAGGTGGAGCG
GCTTTATGCACAAGTCAACAAATTCGCTCTGGCATCTCATTTCTTCTGGGCACTCTGGGCACTCATACAG
AACCAGTATTCTACCATCAGCTTTGACTTCCTCAGGTATGCGGTGATCCGATTCAACCAGTACTTTAAGG
TGAAACCTCAGGTGTCGGCCTTGGAGATGCCAAAATGA

Translation (385 aa):
MAVPPSAPVPCSPFYLRRQEPCPQCSWSMEEKAVASAGCWEPPGPPRAAVPCFSVTVEQDDILPGALRLI
RELRPHWKPEQVRTKRFKDGITNKLLACYVEEDMRDCVLVRVYGERTELLVDRENEVRNFQLLRAHGCAP
KLYCTFQNGLCYEYVQGVALGPEHIREPQLFRLIALEMAKIHTIHANGSLPKPTLWHKMHRYFTLVKDEI
SPSLSADVPKVEVLEQELAWLKEHLSQLDSPVVFCHNDLLCKNIIYDSDKGRVCFIDYEYAGYNYQAFDI
GNHFNEFAGVNVVDYSRYPARETQVQWLRYYLEAQKGTAASPREVERLYAQVNKFALASHFFWALWALIQ
NQYSTISFDFLRYAVIRFNQYFKVKPQVSALEMPK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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