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Report for CCDS15250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15250.1 Public Mus musculus 1 R3hdm1 23 108 98 CCDS HistoryNCBI Gene:226412Re-query CCDS DB by CCDS ID:15250.1Re-query CCDS DB by GeneID:226412See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036288.10 ENSMUSP00000043103.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036288.10Link to Ensembl Protein Viewer:ENSMUSP00000043103.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000036288Re-query CCDS DB by Protein ID:ENSMUSP00000043103
Original member Current member NCBI NM_001357482.1 NP_001344411.1 Accepted alive Link to Nucleotide Sequence:NM_001357482.1Link to Protein Sequence:NP_001344411.1Re-query CCDS DB by Nucleotide ID:NM_001357482Re-query CCDS DB by Protein ID:NP_001344411Link to BLAST:NP_001344411.1
Original member Current member NCBI NM_181750.2 NP_861415.2 Accepted alive Link to Nucleotide Sequence:NM_181750.2Link to Protein Sequence:NP_861415.2Re-query CCDS DB by Nucleotide ID:NM_181750Re-query CCDS DB by Protein ID:NP_861415Link to BLAST:NP_861415.2

Chromosomal Locations for CCDS 15250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 128153229 128153399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128162202 128162243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128162769 128162858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128167893 128168007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128168979 128169057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128174949 128175008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128175092 128175232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128178883 128178991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128179087 128179182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128181717 128181754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128181838 128181888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128181986 128182212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128184400 128184654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128186758 128186909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128190638 128190739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128193460 128193756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128196974 128197097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128211205 128211359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128216401 128216552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128221600 128221703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128223469 128223641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128231323 128231467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128235066 128235148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128235542 128235626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128236397 128236758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGAGGATGTCTGATATTGTTATTATAAAAGATGAAACTGAAACAATGAAGGATTTGGAGGCAGAAATGA
GAGATACAACCAGAGTTGAAAATCTTATCAAATCAGAAAACTATGGGAAGATTTCGGCAGAGAAGAATGA
ACATTGTATTGACAACAATATTGATTTGCAGCGGCCCCCGCAGTCATTTGGACAGACAGGAAAAAGGTCT
AAGTCAAGCTCAAAGTTAAAGCTAGTTCGGAGCCTTGCAGTATGTGAAGAATCTCCACCACCCCCTGCAG
CAGAGATATCACAGGAGACCCAGGAGAAAATTCAGATACAGTTAACACAATCATTTGAAAAAGAGGAAAA
GCCCTCAAAAGATGAAACAGATAAAGAAAAAGCCAGTGATAAGTTACCCAGAAAAATGTTATCAAGAGAT
TCCAGCCAAGAATACACTGATTCAACTGGCATAGATCTACATGAATTTTTAGTAAATACATTAAAAAACA
ATCCCAGGGACAGAATGATGCTGCTGAAATTGGAACAAGAAATTTTAGATTTCATTGGTAATAATGAGTC
CCCACGTAAGAAGTTTCCCCCGATGACATCTTACCACAGGATGCTGTTACACAGAGTGGCTGCCTACTTT
GGATTAGACCACAATGTTGATCAGAGTGGGAAGTCTGTCATAGTGAACAAAACTAGCAACACAAGAATAC
CTGATCAGAAATTTAATGAACATATAAAGGATGATAGAGGTGAAGACTTTCAGAAACGATACATCCTTAA
GAGAGATAACTCTAGCTTTGACAAAGATGATAGCCAGATGAGAATACGTTTGAAAGATGACAGAAGAAGC
AAATCTATAGAAGAAAGAGAAGAAGAATACCAGAGAGCTAGAGACCGAATATTTTCCCAAGATTCCCTGT
GTTCCCAAGAAAACTACATTATTGACAAAAGAATCCAAGATGAGGACACTATTGGTACCCAGCAGAGGCG
CCAGATATTTAGAGTTAATAAAGATGCTTCAGGCCGATCGACAAACAGCCATCAGAGCAGCACTGAAAAT
GAGTTGAAATACTCAGAGCCACGACCCTGGAGCAGCACCGATTCAGACAGCTCCCTCAGAAACCTGAAAC
CCGCTGTCACCAAAGCCAGCAGCTTTAGCGGAATCTCAGTCCTGACAAGAGGTGATAGCTCTGGAAGCAG
CAAAAGCATAGGCAGGCTTTCAAAAACAGGATCTGAGTCTTCAGGTAGTGTAGGGTCCTCTACAGGCTCT
CTTTCTCACACCCAGCAGCCTCTCCCAGGTTCAGCTCTTAGCCAGTCTTCTCATGGCGCACCTGTCATCT
ACCCGGCAGCCAGCAATCACAGTTCTCTTTCCTTTGATGGTGGCCTCAGTGGTCAAGGTGCATCTCCTAG
CACTAGCTTCCTTTTGCTTCCCTTGGAAGCAACTGGCATACCACCTGGCAGTATTCTGATCAACCCACAA
ACAGGTCAGCCCTTCTTAAACCCAGATGGAAGTCCAGTTGTGTACAATCCTCCTATGACTCAACAGCCAG
TTCGAACCCAAGTGCCTGGTCCTCCACAGCCACCTCTGCCACCCCCACCACCTCAGCAGCCAGCAGCCAG
TCACATGTTCTCACAGCCTGTTGGTCCTCTGCAGTCCTCTTCTCAGCCTGTTCAGTGCTCTCCAGCCCCC
TACCCATCCCCGCTCCTGCCAGTCTCACCCACCCAGCAGTACTCCGTGGATAACCTTGGCGCTCAGTTCA
GCCATATGAGTCTTGCCCGCCAGCCATCAGCTGATGGTTCTGACCCTCATGCCACCATGTTCCAGTCCAC
TGTTGTACTACAGTCTCCACAGCAGTCTGGTTACATCGTGACGACAGCACCTCCACATCCGCCACCACCA
CCTCCACCACCTCCCCCTCCTCCTTCCCTACCACCTGGGCAGTCAGTCCCCACTGCCAGTTTCTCTGCCT
CTGGGCATCCTGTCAGCCAGCCTGTGCTCCAGCAGCAGGGGTTTCTTCCTCAGCCCTCACCACAGATGCC
AGCCTGTTACTGTGCTCCAGGCCACTATCACTCCAGCCAACCTCAGTACCGCCCTATCCCTTCTGTCCAT
CACAGTTCACACCTAAACCAACCACTGCCACAGCCTGCACAGCACACAGGTTATCAAGTTATGCCCAACC
AGCAGCAAAACTACCAAGGAATAGTTGGAGTTCAGTCACCGCAGAGTCAGAGCCTCATGGGAGGCCAGCC
AAACAGCACTGGACCTCATATCCAAGGAGTGGTCATCCCCTACCCCTCAGTGCCATCATATCAGGTTTCA
CTGCCTCAAGGTTCTCAAGGAATTGCCCATCAGACTTATCAACAGCCTGTTGTGTTCCCTAATCAGTCTA
ATCAAGGATCTCTGCCCACAACAGGAATGCCAGTCTATTACAGTGTCATTCCACCTGGCCAACAAAGTAA
TTTAAGCTCTGCAGTTGGTTACTTACAACATCCAGGGTCAGAACAAGTACAGTTTCCTCGAACCACGTCA
CCATGCAGCTCTCAACAGCTCCAAGGCCACCAGTGTGCAGCTGTGCCACAGCAGCCACCTGGTGGAGGAA
TGGTAATGATGCAGCTCAACCTACCAAATAACCCACAGTCTCGGACCCACTCACCCCCACAGTGGAAACA
GAACAAGCACTACTGTGACCACCAGAGAGGACAGAAGTGTATGGACTTTAGCAACATGGATAATATTGTT
CAGCCCAGCCCTCAGCTCAGCAGCCCCATCCTTTCTCCAGTGCAGTCGCCAGCACCAGCTCAGCTGTCCA
CTCTGAAGACCATCCGTCCCTCAGGACCACCGCTTTCCATCATGTCCCAGTTTGCTAGACCTTTTGTTCC
TGGACAGGGAGATGCCAGGTATCCGCTGCTTGGCCAGCCCCTGCAGTACAACCCTCCTACTCTTCTGCAT
GGACACATTCCACATCAACAGGGTCAGTCTGGCAGCAGGCATGGAAACCGAGGACGTAGACAAGCTAAGA
AAGCTGCATCCACAGACCTTGGAGCAGGAGAAGCAGTTGTCGGCAAGGTCTTGGAAATCACAGAACTACC
AGACGGAATAACTCGAGTGGAAGCCGAGAAGCTTTTTGGGGAACTCTTTAAAATTGGCGCCAAGATCCGA
TGGCTCCGGGACCCCCAGTCTCAGCCTCAGCTGCGTCGTCACGCTCTCTGCTGTGGTAGTGGGGATAACA
CTGTCAACCCTGAGCACTCTAAACCCAGTGACCTGGCCTCTACGTACACTGTCCTAGCTACGTTCCCCTC
CATTTCAGCTGCACAGAGTGCACTGAAGAAGCAGATCCATTCAGTGAACAAGTTTAAGCTGAGAATGAGC
AAGAAGCACTACGATTTCCACATTTTGGAAAGGGCAAGTTCTCAGTAA

Translation (1135 aa):
MRMSDIVIIKDETETMKDLEAEMRDTTRVENLIKSENYGKISAEKNEHCIDNNIDLQRPPQSFGQTGKRS
KSSSKLKLVRSLAVCEESPPPPAAEISQETQEKIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRD
SSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYF
GLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRS
KSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTIGTQQRRQIFRVNKDASGRSTNSHQSSTEN
ELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGS
LSHTQQPLPGSALSQSSHGAPVIYPAASNHSSLSFDGGLSGQGASPSTSFLLLPLEATGIPPGSILINPQ
TGQPFLNPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHMFSQPVGPLQSSSQPVQCSPAP
YPSPLLPVSPTQQYSVDNLGAQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPP
PPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGFLPQPSPQMPACYCAPGHYHSSQPQYRPIPSVH
HSSHLNQPLPQPAQHTGYQVMPNQQQNYQGIVGVQSPQSQSLMGGQPNSTGPHIQGVVIPYPSVPSYQVS
LPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTS
PCSSQQLQGHQCAAVPQQPPGGGMVMMQLNLPNNPQSRTHSPPQWKQNKHYCDHQRGQKCMDFSNMDNIV
QPSPQLSSPILSPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYNPPTLLH
GHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRVEAEKLFGELFKIGAKIR
WLRDPQSQPQLRRHALCCGSGDNTVNPEHSKPSDLASTYTVLATFPSISAAQSALKKQIHSVNKFKLRMS
KKHYDFHILERASSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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