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Report for CCDS15219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15219.1 Public Mus musculus 1 Serpinb2 23 108 98 CCDS HistoryNCBI Gene:18788Re-query CCDS DB by CCDS ID:15219.1Re-query CCDS DB by GeneID:18788See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009356.10 ENSMUSP00000009356.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009356.10Link to Ensembl Protein Viewer:ENSMUSP00000009356.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000009356Re-query CCDS DB by Protein ID:ENSMUSP00000009356
Original member Current member EBI ENSMUST00000064916.8 ENSMUSP00000065277.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064916.8Link to Ensembl Protein Viewer:ENSMUSP00000065277.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000064916Re-query CCDS DB by Protein ID:ENSMUSP00000065277
Original member Current member NCBI NM_001174170.1 NP_001167641.1 Accepted alive Link to Nucleotide Sequence:NM_001174170.1Link to Protein Sequence:NP_001167641.1Re-query CCDS DB by Nucleotide ID:NM_001174170Re-query CCDS DB by Protein ID:NP_001167641Link to BLAST:NP_001167641.1
Original member Current member NCBI NM_011111.4 NP_035241.1 Accepted alive Link to Nucleotide Sequence:NM_011111.4Link to Protein Sequence:NP_035241.1Re-query CCDS DB by Nucleotide ID:NM_011111Re-query CCDS DB by Protein ID:NP_035241Link to BLAST:NP_035241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167641.1 415 P12388 415 100% 0 0
NP_035241.1 415 P12388 415 100% 0 0

Chromosomal Locations for CCDS 15219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 107515473 107515640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107519652 107519771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107522147 107522275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107522692 107522809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107523065 107523207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107523797 107523961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107524537 107524941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGAAGAACTTTCCATGGCAAACACCATGTTTGCCCTCAATCTCCTTAAGCAGATAGAAAAATCAAACT
CTACCCAGAACATCTTTATCTCTCCATGGAGCATCTCATCAACATTGGCCATAGTTCTCCTCGGTGCTGG
GGGTAACACTGAACAGCAGATGGCCAAAGTGCTGCAGTTTAATGAAATTGGCAGTTATGGTATCACCACA
AGAAACCCAGAGAACTTCAGTGGCTGTGATTTCGCACAACAGATACAGAAGGAAAATTATCCTAGTGCTA
TTTTACAGGCACAAGCAGGAGATAAAATCCATTCAGCCTTCTCCTCTCTCAGCTCAACAATCAACACACC
ACAGGGGGATTATTTGTTAGAAAGTGCAAACAAGCTGTTTGGAGAGAAGTCTGCAAGATTCAAAGAAGAA
TACATCCAACTCTCTAAGAAATATTACTCAACAGAACCAGAAGCAGTGGACTTCCTTGAATGTGCTGAAG
AAGCTAGGGAAAAGATTAATTCTTGGGTCAAGACTCAAACCAAAGGTGAAATCCCAAACCTGCTACCCGA
AGGTTCTGTAGATGAAGACACCAAGATGGTGCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAACT
CCATTTGAGAAGAAACTTAATGGGCTTTATCCTTTCCGTGTGAACTCGCATGAGAGCATACCTGTCCAGA
TGATGTTCCTCCATGCAAAGCTGAACATTGGATACATAAAGGACCTGAAGACTCAGATCCTAGAACTTCC
GCATACTGGAAACATCAGCATGCTCCTGTTGCTTCCCGATGAGATTGAGGACGCATCCACTGGCTTGGAA
TTGCTGGAAAGTGAAATAAACTTTGCCAACTTCAACAAGTGGATCAGCAAAGACACACTGGATGAAGATG
ATGTTGTGGTCTACATTCCCAAGTTCAAACTGGCACAAAGCTACGAACTCAAGTCCATTCTTCAAAGCAT
GGGCATGGAGGATGCCTTCAACAAGGGCAAGGCCAACTTCTCAGGAATGTCTGAGAGGAATGACCTTTTT
CTTTCTGAGGTGTTCCATCAAGCCAGCGTGGATGTCACCGAGGAGGGCACTGTGGCAGCTGGTGGGACTG
GGGCAGTTATGACAGGAAGAACTGGCCATGGTGGCCCACAGTTTGTGGCCGATCATCCCTTTCTTTTCTT
TATCATGGACAAAATTACCCACACGATACTATTTGTTGGTAGATTCTCCTCACCCTAA

Translation (415 aa):
MEELSMANTMFALNLLKQIEKSNSTQNIFISPWSISSTLAIVLLGAGGNTEQQMAKVLQFNEIGSYGITT
RNPENFSGCDFAQQIQKENYPSAILQAQAGDKIHSAFSSLSSTINTPQGDYLLESANKLFGEKSARFKEE
YIQLSKKYYSTEPEAVDFLECAEEAREKINSWVKTQTKGEIPNLLPEGSVDEDTKMVLVNAVYFKGKWKT
PFEKKLNGLYPFRVNSHESIPVQMMFLHAKLNIGYIKDLKTQILELPHTGNISMLLLLPDEIEDASTGLE
LLESEINFANFNKWISKDTLDEDDVVVYIPKFKLAQSYELKSILQSMGMEDAFNKGKANFSGMSERNDLF
LSEVFHQASVDVTEEGTVAAGGTGAVMTGRTGHGGPQFVADHPFLFFIMDKITHTILFVGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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