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Report for CCDS15148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15148.1 Public Mus musculus 1 Agap1 23 108 98 CCDS HistoryNCBI Gene:347722Re-query CCDS DB by CCDS ID:15148.1Re-query CCDS DB by GeneID:347722See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190096.6 ENSMUSP00000140599.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190096.6Link to Ensembl Protein Viewer:ENSMUSP00000140599.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190096Re-query CCDS DB by Protein ID:ENSMUSP00000140599
Original member Current member NCBI NM_001037136.1 NP_001032213.1 Accepted alive Link to Nucleotide Sequence:NM_001037136.1Link to Protein Sequence:NP_001032213.1Re-query CCDS DB by Nucleotide ID:NM_001037136Re-query CCDS DB by Protein ID:NP_001032213Link to BLAST:NP_001032213.1

Chromosomal Locations for CCDS 15148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 89455430 89455592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89604598 89604656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89609496 89609583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89627761 89627846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89630388 89630529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89634160 89634294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89663661 89663788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89665034 89665189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89671179 89671271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89725961 89726065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89743728 89743896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89789163 89789324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89834434 89834588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89837712 89837802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89843021 89843243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89887506 89887761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89888691 89888894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2415 nt):
ATGAACTACCAGCAGCAGCTGGCCAACTCGGCTGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCGGTCC
ACCCCAACATCTACTCCATCTACGAGCTGCTGGAGCGCGTGGAGGAGCCGGTGCTGCAGAACCAGATTCG
GGAGCACGTCATCGCCATCGAAGATGCTTTCGTGAACAGCCAGGAATGGACACTCAGCCGATCGGTACCG
GAGCTCAAAGTGGGAATTGTGGGTAACCTGGCCAGTGGCAAGTCTGCGCTGGTGCACCGGTACCTGACAG
GCACGTACGTGCAGGAGGAATCTCCAGAAGGTGGCAGGTTCAAGAAGGAGATTGTTGTTGATGGACAGAG
TTATCTGCTGCTGATTAGGGATGAAGGGGGCCCCCCGGAGGCACAGTTCGCCATGTGGGTGGACGCGGTC
ATCTTTGTCTTCAGCTTGGAGGATGAGATCAGTTTCCAGACTGTCTACCATTACTACAGCCGAATGGCCA
ACTACAGGAACACCAGTGAGATCCCATTAGTGCTGGTGGGGACCCAGGATGCCATAAGTTCCACCAACCC
GAGGGTCATCGATGACGTCAGGGCTCGGAAGCTCTCCAATGACCTGAAGAGGTGCACGTACTATGAGACG
TGCGCCACCTATGGGCTCAACGTGGAGCGGGTCTTCCAGGACGTTGCCCAGAAGATCGTTGCCACAAGGA
AGAAGCAGCAGCTATCCATAGGCCCCTGCAAGTCCTTACCCAACTCTCCAAGCCACTCGTCTGTGTGTTC
TGCCCAAGTGTCCGCGGTACACATCAGCCAGACAAGTAACGGAGGTGGGAGTTTAAGTGACTACTCATCC
TCTGTTCCTTCGACCCCAAGCACCAGCCAGAAAGAGCTTCGGATCGACGTCCCTCCCACTGCCAACACTC
CAACGCCTGTCCGGAAGCAGTCCAAGCGCAGGTCCAACCTATTCACATCTAGGAAAGGGAGCGACCCAGA
CAAAGAGAAGAAAGGCCTGGAGAGCCGTGCGGACAGCATCGGGAGCGGGCGAGCCATCCCAATTAAACAG
GGCATGCTGCTGAAGCGAAGTGGCAAGTCACTGAACAAAGAGTGGAAAAAGAAGTACGTCACCCTGTGCG
ACAACGGTGTGCTGACCTACCACCCCAGTTTACATGATTACATGCAGAATGTCCACGGCAAAGAGATAGA
CCTCTTGAGGACCACTGTGAAGGTGCCGGGGAAGAGGCCGCCCCGAGCCACGTCTGCCTGTGCACCGATC
TCCAGTCCCAAAACCAACGGCCTGGCCAAGGACATGAGCAGTTTACACATCTCACCAAATTCAGACACGG
GGCTGGGTGACTCGGTGTGTTCCAGCCCAAGTATCTCCAGCAGCACCAGCCCCAAGCTCGACCCACCCCC
CTCCCCCCACGCCAACAGAAAGAAGCACCGGAGGAAGAAAAGTACCAGCAACTTCAAGGCTGACGGGCTC
TCAGGCACTGCTGAAGAGCAAGAAGAAAACTTGGAGTTTATCATTGTGTCCCTCACTGGCCAGACGTGGC
ACTTTGAAGCCACCACATACGAGGAGCGAGACGCATGGGTCCAAGCCATCGAGAGCCAGATCCTCGCCAG
CCTGCAGTCGTGCGAGAGCAGCAAGAATAAGTCCCGACTAACCAGCCAGAGCGAAGCCATGGCCCTGCAG
TCCATCCGTAACATGAGAGGGAACTCGCACTGCGTGGACTGTGACACCCAAAACCCTAACTGGGCCAGTT
TGAACTTGGGAGCCCTCATGTGTATCGAGTGCTCGGGGATCCACCGGAATCTCGGCACCCACCTCTCTCG
GGTCAGATCGCTAGACCTGGACGACTGGCCCATGGAGCTGATCAAGGTGATGTCATCCATCGGGAATGAG
CTGGCCAACAGCGTGTGGGAAGAGGGCAGCCAGGGACGGACAAAGCCCTCACTGGACTCCACCAGGGAAG
AAAAGGAAAGGTGGATCCGGGCCAAGTATGAGCAGAAACTCTTCCTGGCCCCACTGCCATGCACAGAGTT
CTCCCTGGGCCAGCAGCTGCTGCGTGCCACTGCCGAGGAAGACCTGCGGACTGTCATCCTACTTCTGGCA
CATGGGTCCCGGGACGAGGTGAATGAGACCTGTGGGGAAGGAGACGGTCGCACGGCGCTGCACCTGGCCT
GTCGCAAGGGCAACGTGGTCCTGGCTCAGCTGCTGATCTGGTACGGAGTGGACGTCATGGCCCGAGACGC
CCACGGGAACACAGCACTGGCCTATGCCCGGCAGGCCTCCAGCCAGGAGTGTATTGACGTGCTTCTACAG
TATGGCTGCCCCGACGAGCGCTTTGTGCTCATGGCTACCCCTAACCTGTCCAGGAAGAGCAACAGCAGGA
ACAACAGTAGCGGGAGGGCGCCCAGTGTCATCTGA

Translation (804 aa):
MNYQQQLANSAAIRAEIQRFESVHPNIYSIYELLERVEEPVLQNQIREHVIAIEDAFVNSQEWTLSRSVP
ELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEAQFAMWVDAV
IFVFSLEDEISFQTVYHYYSRMANYRNTSEIPLVLVGTQDAISSTNPRVIDDVRARKLSNDLKRCTYYET
CATYGLNVERVFQDVAQKIVATRKKQQLSIGPCKSLPNSPSHSSVCSAQVSAVHISQTSNGGGSLSDYSS
SVPSTPSTSQKELRIDVPPTANTPTPVRKQSKRRSNLFTSRKGSDPDKEKKGLESRADSIGSGRAIPIKQ
GMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHDYMQNVHGKEIDLLRTTVKVPGKRPPRATSACAPI
SSPKTNGLAKDMSSLHISPNSDTGLGDSVCSSPSISSSTSPKLDPPPSPHANRKKHRRKKSTSNFKADGL
SGTAEEQEENLEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSEAMALQ
SIRNMRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPMELIKVMSSIGNE
LANSVWEEGSQGRTKPSLDSTREEKERWIRAKYEQKLFLAPLPCTEFSLGQQLLRATAEEDLRTVILLLA
HGSRDEVNETCGEGDGRTALHLACRKGNVVLAQLLIWYGVDVMARDAHGNTALAYARQASSQECIDVLLQ
YGCPDERFVLMATPNLSRKSNSRNNSSGRAPSVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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