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Report for CCDS15144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15144.1 Public Mus musculus 1 Hjurp 23 108 98 CCDS HistoryNCBI Gene:381280Re-query CCDS DB by CCDS ID:15144.1Re-query CCDS DB by GeneID:381280See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15144.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054674.14 ENSMUSP00000054263.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054674.14Link to Ensembl Protein Viewer:ENSMUSP00000054263.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054674Re-query CCDS DB by Protein ID:ENSMUSP00000054263
Original member NCBI NM_198652.2 NP_941054.2 Updated not alive Link to Nucleotide Sequence:NM_198652.2Link to Protein Sequence:NP_941054.2Re-query CCDS DB by Nucleotide ID:NM_198652Re-query CCDS DB by Protein ID:NP_941054
Current member NCBI NM_198652.3 NP_941054.2 Accepted alive Link to Nucleotide Sequence:NM_198652.3Link to Protein Sequence:NP_941054.2Re-query CCDS DB by Nucleotide ID:NM_198652Re-query CCDS DB by Protein ID:NP_941054Link to BLAST:NP_941054.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941054.2 667 Q6PG16-1 667 99.8501% 0 1

Chromosomal Locations for CCDS 15144.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88265181 88266658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88267948 88268026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88269321 88269413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88270202 88270299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88272729 88272765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88275042 88275097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88277219 88277285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88277374 88277469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGGAGTCTATGGGTCGGCAGGACCGCAGGCTGCATCAGCAGCTTAAGGAAAGCAGTAGCCGCTTCCAGA
CGTTAATGAAGCGGCTGATAGCGAAGTACAACCAGCCCTTTGAGGACGACCCGTTGGTGGAGATGAGGAC
GTTAACCTACGAGACGCCCCAGGGGTTGAGAGTTTGGGGAGGAAAGCTGATGAAGAAGGAAGACAAGGAA
TACACTCAGGTGATTGACAGATTAAATGGGCAAGCTCCAGAAGGTGATTCAGAGAGCAGCGGTGCGGATA
CGAGCTTAGAGGAGAACTGGCCATCTTGCAGCTCAGCGATGAGAGAAGCCTCTGGTGATCCTAGGCAGCG
TCAGCCTGCAGTGCCCGGAAACACCTTGGAAACTGATTTAAGAAGGAAGTACTTGACCCAGGTGGATATA
TTGCCTCAAGATGAAGAGTATTTTAAGAACGCAGAGAAGAGAGGTGGAAAAGACACAGTCATGACTTGGG
TTCCTTCCGTGACCTCATCTGTCACACCAGCCTCTGGATGCCAGGATGCTATCTCTGCAAAGAGCTCTGG
TGGTCCTGAAGTATCTGCTTTGTCCTCTAGAGGCCAGGGTCCCTCATACCCTTGCCCAGCTGATATGGCC
ATTGTGGCTAGAAGTGATGGCCTCTCCTTACTTGGGACCAGCAGCAACAGCGTAAGCAGCCAGTCCTTTG
AGGTTGATGACCTTTGCAATGTGACAATCAGCGATTTGTATGAAGGCATGATGCATTCCATGAGTAGGCT
GCTGCGCTCAAAGCCATCCTGCATCATCTCCACCAAGACCTACATCAACCAGAGCTGGAAGCTCCGGAGG
AGACCCTCACGCAAGCAGGGGCTGCACAAGAACAGGACACACTGCCCCCGGAGCAAGCCCTCCCAGAGGA
GTGCCAGGAAGGGGCCTGCGTCCTGCTCAGAGCCCGGGAAAGAGGCCGGAATATTAAGAGACTACGGGAA
TTTACTGCACGTTGCTCCCCACAAGACAGGCTTAGAACTGAAAAGCGTTTCTCTTGAAGGAAGCAAACGC
CAAGTCCATAAATCCAGTCCAGCTTGGAAGGAGCTCCAGATGATGCCGCAGAAGGACTTGGACTTAAACC
GTGAGCGAGAAAATAGGGTGATGACATTACAGTGGCTAATTTCACCCGTCAAGGTGGTTCCCAGACCAAG
GATGCTTCCAAGTCAAGTAGAGAAGTGGTATAGAGAGATTAAAATCAAATTTGACAAGCTTCATCAGGAA
TATTGCCTGTCTTCTGGGAAACAGCCTCGCCTGACTGACCCCACAGAGTCTTGGGCTGTCGATGTGTACA
GAAGTGGTTCTAAGAGCCCAGGCAGCCGTCAGGATGTAGAAACCTGCAGGCCCAGTTCACCTTTCGGCAG
AGAAAAGACAGAAAGGCCAGGTGAAGCTTTAGAAGACCTGAGGGGAAATGGAAAGTCTGTCAAAACAAAG
AGCTGTCTTCTAAGGAGCTGTCCCTCTCCAGAGGGCAGCCCGTCACGGAGCCCCAGCCATTCTCAGCTGA
GCTCTGGCCTTCAAGAGCACAATTCTGAACCTACTGGTAAGGCAGTGTGGCCCAGTACAGCTATTTCAGC
ACCAAGCATAGGCTCTCCAGGCTGTGGGAAGGATAACTATGATGAGCTTAAAAAAGAATTCAACAGACTT
TATCAGAAGTATTGTCTGTCACCGCAGCGGGCGAAGGTGACTTCGTGTGGCAGAGTATCGCCAATGAAAG
CTGCTGCAGCTCTTCCCTGTCAATCAGAGCACTTGAAGAGACTAAATCCAGACTCCCCACAACAGAGTTC
CCAGAAACGGTCAATCTCTCCTGGCTGTCACAGAAGAGTCCTGCAGGATTCAACTGCACAGACTGCTAGT
ACACTTGTGAGAGACTCTTGGCTGCCAACAAAGAGGTGCAAGTTGTCATACCCGGTAGCTTGTGCTCACC
AGGCCAAGTTTCACGATACCTCAGGAGCATCAGGCTGGCCCTGA

Translation (667 aa):
MESMGRQDRRLHQQLKESSSRFQTLMKRLIAKYNQPFEDDPLVEMRTLTYETPQGLRVWGGKLMKKEDKE
YTQVIDRLNGQAPEGDSESSGADTSLEENWPSCSSAMREASGDPRQRQPAVPGNTLETDLRRKYLTQVDI
LPQDEEYFKNAEKRGGKDTVMTWVPSVTSSVTPASGCQDAISAKSSGGPEVSALSSRGQGPSYPCPADMA
IVARSDGLSLLGTSSNSVSSQSFEVDDLCNVTISDLYEGMMHSMSRLLRSKPSCIISTKTYINQSWKLRR
RPSRKQGLHKNRTHCPRSKPSQRSARKGPASCSEPGKEAGILRDYGNLLHVAPHKTGLELKSVSLEGSKR
QVHKSSPAWKELQMMPQKDLDLNRERENRVMTLQWLISPVKVVPRPRMLPSQVEKWYREIKIKFDKLHQE
YCLSSGKQPRLTDPTESWAVDVYRSGSKSPGSRQDVETCRPSSPFGREKTERPGEALEDLRGNGKSVKTK
SCLLRSCPSPEGSPSRSPSHSQLSSGLQEHNSEPTGKAVWPSTAISAPSIGSPGCGKDNYDELKKEFNRL
YQKYCLSPQRAKVTSCGRVSPMKAAAALPCQSEHLKRLNPDSPQQSSQKRSISPGCHRRVLQDSTAQTAS
TLVRDSWLPTKRCKLSYPVACAHQAKFHDTSGASGWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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